Argonum-Clever2 / mikeView external linksLinks
☆33Mar 19, 2025Updated 10 months ago
Alternatives and similar repositories for mike
Users that are interested in mike are comparing it to the libraries listed below
Sorting:
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆17Jan 24, 2026Updated 3 weeks ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Mar 23, 2025Updated 10 months ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆36Dec 21, 2025Updated last month
- The tools are used for displaying hic signal of genome☆24Jan 4, 2021Updated 5 years ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆254Jan 5, 2026Updated last month
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆164Oct 29, 2025Updated 3 months ago
- ☆31Apr 7, 2025Updated 10 months ago
- ☆21Aug 8, 2024Updated last year
- A novel genome assembly pipeline based on deep learning☆68Dec 2, 2024Updated last year
- ☆29Feb 5, 2026Updated last week
- Centromics: visualing centromeres with multiple omics data☆25Mar 4, 2025Updated 11 months ago
- Neural network classification of TE☆97Oct 9, 2025Updated 4 months ago
- Yet another Hi-C scaffolding tool☆170Nov 4, 2024Updated last year
- Reference-free profiling of polyploid genomes☆141Oct 2, 2025Updated 4 months ago
- ☆29Jul 16, 2022Updated 3 years ago
- A genome assembly assessment pipeline.☆37Nov 20, 2023Updated 2 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Jun 21, 2025Updated 7 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Jul 26, 2023Updated 2 years ago
- Portable solution to generate genome alignment chains using lastz☆60Dec 20, 2025Updated last month
- Visualing species tree from ASTRAL with gene tree discordance☆27May 13, 2025Updated 9 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Jan 3, 2022Updated 4 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Sep 17, 2025Updated 4 months ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated 9 months ago
- The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding☆14Feb 11, 2025Updated last year
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆49Sep 22, 2025Updated 4 months ago
- An ultra-fast gzip file tools☆27Apr 25, 2024Updated last year
- ☆16Apr 3, 2023Updated 2 years ago
- A KMER-based genome-wIde Assocation testing approach on polyploids☆41Feb 6, 2026Updated last week
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 4 years ago
- A GAN-based method for Enhancing Hi-C data☆32Dec 17, 2020Updated 5 years ago
- Structural Variant Identification Method using Genome Assemblies☆134Sep 16, 2022Updated 3 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆104Nov 17, 2025Updated 2 months ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆87Jan 25, 2026Updated 3 weeks ago
- ☆38Oct 6, 2025Updated 4 months ago
- ☆16Dec 25, 2024Updated last year
- ☆16Jun 30, 2022Updated 3 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated last year
- Fast and frugal disk based k-mer counter☆14Apr 1, 2021Updated 4 years ago