☆35Jun 24, 2026Updated last month
Alternatives and similar repositories for mike
Users that are interested in mike are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆18Jan 24, 2026Updated 6 months ago
- A KMER-based genome-wIde Assocation testing approach on polyploids☆64Jun 18, 2026Updated last month
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆77Jun 4, 2026Updated last month
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆41May 29, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆33Apr 7, 2025Updated last year
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆180Jun 23, 2026Updated last month
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- The tools are used for displaying hic signal of genome☆26Jan 4, 2021Updated 5 years ago
- ☆23Aug 8, 2024Updated last year
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆276Jul 7, 2026Updated 3 weeks ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆104Updated this week
- Reference-free profiling of polyploid genomes☆144Oct 2, 2025Updated 9 months ago
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Centromics: visualing centromeres with multiple omics data☆27Mar 4, 2025Updated last year
- ☆32Mar 3, 2026Updated 4 months ago
- Neural network classification of TE☆100Apr 3, 2026Updated 3 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆21Jul 26, 2023Updated 3 years ago
- Fast and frugal disk based k-mer counter☆14Apr 1, 2021Updated 5 years ago
- Yet another Hi-C scaffolding tool☆181Nov 4, 2024Updated last year
- ☆29Jul 16, 2022Updated 4 years ago
- A genome assembly assessment pipeline.☆39Jun 5, 2026Updated last month
- The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding☆14Feb 11, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 10 months ago
- ☆16Jun 30, 2022Updated 4 years ago
- Structural Variant Identification Method using Genome Assemblies☆145Sep 16, 2022Updated 3 years ago
- An ultra-fast gzip file tools☆28Jun 23, 2026Updated last month
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆51Sep 22, 2025Updated 10 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆34Jan 3, 2022Updated 4 years ago
- Portable solution to generate genome alignment chains using lastz☆68Jul 15, 2026Updated 2 weeks ago
- ☆45Dec 11, 2025Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆42Oct 6, 2025Updated 9 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆114Nov 17, 2025Updated 8 months ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated last year
- several scripts for bioinformatics☆25Nov 27, 2025Updated 8 months ago
- A GAN-based method for Enhancing Hi-C data☆33Dec 17, 2020Updated 5 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆297May 28, 2026Updated 2 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year