kcakdemir / HiCPlotterLinks
“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
☆19Updated 5 years ago
Alternatives and similar repositories for HiCPlotter
Users that are interested in HiCPlotter are comparing it to the libraries listed below
Sorting:
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆16Updated 7 months ago
- ☆16Updated 3 years ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆23Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 4 years ago
- ☆29Updated 2 years ago
- ☆21Updated 3 years ago
- ☆23Updated 3 years ago
- A haplotype analysis toolkit for natural variation study.☆31Updated 2 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆17Updated 2 years ago
- R package to explore active transposable elements with RNA-seq data☆21Updated 3 years ago
- Pan-3D genome analysis of soybean Hi-C data☆12Updated 2 years ago
- The tools are used for displaying hic signal of genome☆24Updated 5 years ago
- Scripts that used in our chicken T2T manuscript.☆22Updated 3 weeks ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆21Updated 3 years ago
- B73Ab10 genome assembly methods☆16Updated 4 years ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆14Updated last year
- A pipeline for genomic variant detection with genome assemblies at population scale☆36Updated 8 months ago
- ☆27Updated 2 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆36Updated 7 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- A pipeline for isoseq☆23Updated 7 years ago
- ☆44Updated last year
- ☆17Updated 5 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- ☆29Updated 3 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- ☆16Updated 6 years ago
- ☆21Updated last year
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆23Updated 2 months ago