Alternatives and similar repositories for HiCPlotter:

Users that are interested in HiCPlotter are comparing it to the libraries listed below

• yiliao1022 / Pepper3Dgenome
  ☆15Updated 2 years ago
• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆14Updated 7 months ago
• qclian / Pan_Ath
  Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…
  ☆17Updated 8 months ago
• Wendellab / CisTransRegulation
  Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum
  ☆16Updated last year
• lurebgi / chicken-T2T
  Scripts that used in our chicken T2T manuscript.
  ☆19Updated last year
• ma-compbio / Phylo-HMRF
  ☆16Updated 4 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 6 years ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆28Updated last year
• shuliliu / cattleGTEx
  The cattle Genotype-Tissue Expression atlas v1
  ☆23Updated last year
• JM-SONG / GenomeSyn
  ☆22Updated 2 years ago
• LAILAB-CAU / update-Mo17
  ☆23Updated last year
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆21Updated 7 years ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆20Updated 4 years ago
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆21Updated 7 months ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆23Updated 4 years ago
• zyndagj / BSMAPz
  Updated and optimized fork of BSMAP
  ☆22Updated 4 years ago
• baoxingsong / dCNS
  conserved non-coding sequence
  ☆14Updated 3 years ago
• sunyumail93 / PipeRNAseq
  A comprehensive pipeline for RNAseq data analysis
  ☆22Updated 5 months ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆32Updated 2 years ago
• pinbo / SNP_Primer_Pipeline
  ☆21Updated 2 years ago
• LingbinNi / soybean_pan-3D_genome_analysis
  Pan-3D genome analysis of soybean Hi-C data
  ☆12Updated last year
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆38Updated last year
• yilinZhang-bio / Watermelon-pangenome
  ☆20Updated last year
• Immortal2333 / Haplotype_Genome_Assembly
  Genome haplotype assembly and assessment method
  ☆12Updated last year
• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆28Updated 3 years ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆41Updated last year
• ChenFengling / HiCpipe
  an efficient Hi-C data processing pipeline
  ☆15Updated 10 months ago
• yiliao1022 / LASTZ_SV_pipeline
  ☆16Updated 5 years ago
• LappalainenLab / lorals_paper_code
  ☆24Updated 2 years ago