kcakdemir / HiCPlotterLinks
“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
☆19Updated 4 years ago
Alternatives and similar repositories for HiCPlotter
Users that are interested in HiCPlotter are comparing it to the libraries listed below
Sorting:
- ☆15Updated 3 years ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆15Updated 10 months ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- The tools are used for displaying hic signal of genome☆23Updated 4 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- ☆25Updated 2 years ago
- R package to explore active transposable elements with RNA-seq data☆20Updated 2 years ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆23Updated 2 years ago
- A machine learning-based genotyping tool for structural variation in short reads☆19Updated last month
- Scripts that used in our chicken T2T manuscript.☆19Updated last year
- A comprehensive pipeline for RNAseq data analysis☆22Updated 9 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- ☆21Updated 2 years ago
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 4 years ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆21Updated 11 months ago
- IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆18Updated 7 years ago
- ☆23Updated 2 years ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆21Updated 3 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- Construct and Analyze the North American Vitis pangenome☆23Updated last year
- GENE-SWitCH project RNA-Seq analysis pipeline☆26Updated 3 months ago
- scripts used for processing and analyzing data in the article.☆13Updated 5 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆29Updated 3 weeks ago
- ☆25Updated 3 years ago
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- conserved non-coding sequence☆14Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last year
- The cattle Genotype-Tissue Expression atlas v1☆26Updated 2 years ago