kcakdemir / HiCPlotterLinks
“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
☆19Updated 5 years ago
Alternatives and similar repositories for HiCPlotter
Users that are interested in HiCPlotter are comparing it to the libraries listed below
Sorting:
- ☆16Updated 3 years ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆23Updated last year
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆16Updated 7 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 4 years ago
- ☆29Updated 2 years ago
- ☆21Updated 3 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- Scripts that used in our chicken T2T manuscript.☆22Updated 2 years ago
- ☆23Updated 3 years ago
- A comprehensive pipeline for RNAseq data analysis☆22Updated last year
- Pan-3D genome analysis of soybean Hi-C data☆12Updated 2 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆36Updated 6 months ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆17Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆23Updated last month
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆10Updated 5 years ago
- ☆17Updated 5 years ago
- several scripts for bioinformatics☆24Updated last month
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆14Updated last year
- A haplotype analysis toolkit for natural variation study.☆31Updated 2 years ago
- ☆44Updated last year
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 4 years ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆21Updated 3 years ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- ☆16Updated 6 years ago
- Identification of conserved non-coding sequences in plants☆31Updated 3 months ago
- The tools are used for displaying hic signal of genome☆24Updated 5 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago