Alternatives and similar repositories for HiCPlotter

Users that are interested in HiCPlotter are comparing it to the libraries listed below

• yiliao1022 / Pepper3Dgenome
  ☆15Updated 3 years ago
• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆15Updated last week
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆42Updated last week
• Wendellab / CisTransRegulation
  Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum
  ☆16Updated last year
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 7 years ago
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆30Updated last month
• LAILAB-CAU / update-Mo17
  ☆25Updated 2 years ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆24Updated 4 years ago
• hanlinqian / IntegrativeNetworkMap
  ☆24Updated 2 years ago
• XiDsLab / TAGET
  ☆19Updated 2 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 4 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆39Updated 4 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆34Updated 3 years ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆14Updated last year
• dixonlab / hic_breakfinder
  ☆37Updated 5 years ago
• FemeniasM / ExplorATEproject
  R package to explore active transposable elements with RNA-seq data
  ☆20Updated 2 years ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆32Updated last year
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆36Updated 3 weeks ago
• zyndagj / BSMAPz
  Updated and optimized fork of BSMAP
  ☆22Updated 4 years ago
• shuliliu / cattleGTEx
  The cattle Genotype-Tissue Expression atlas v1
  ☆26Updated 2 years ago
• qclian / Pan_Ath
  Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…
  ☆21Updated last year
• lurebgi / chicken-T2T
  Scripts that used in our chicken T2T manuscript.
  ☆20Updated last year
• maxfieldk / TE-Seq
  Snakemake pipeline to analyze transposable element 'omics data.
  ☆23Updated this week
• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆26Updated 4 months ago
• ma-compbio / Phylo-HMRF
  ☆16Updated 4 years ago
• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆28Updated 4 years ago
• fanagislab / EndHiC
  EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…
  ☆23Updated 2 years ago
• LingbinNi / soybean_pan-3D_genome_analysis
  Pan-3D genome analysis of soybean Hi-C data
  ☆11Updated 2 years ago
• LappalainenLab / lorals_paper_code
  ☆26Updated 3 years ago
• baoxingsong / dCNS
  conserved non-coding sequence
  ☆14Updated 3 years ago