kcakdemir / HiCPlotter
“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
☆17Updated 4 years ago
Alternatives and similar repositories for HiCPlotter:
Users that are interested in HiCPlotter are comparing it to the libraries listed below
- ☆15Updated 2 years ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆14Updated 6 months ago
- A tool for performing collinearity-incorporating homology inference☆28Updated last year
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆17Updated 7 months ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 3 years ago
- ☆22Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- ☆15Updated last month
- The tools are used for displaying hic signal of genome☆23Updated 4 years ago
- ☆16Updated 4 years ago
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year
- Scripts that used in our chicken T2T manuscript.☆19Updated last year
- ☆23Updated last year
- ☆24Updated 3 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆20Updated 4 years ago
- Dynamic Elongation of a Genome Assembly Path☆20Updated 8 months ago
- ☆21Updated 2 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆24Updated 3 weeks ago
- A pipeline for isoseq☆23Updated 6 years ago
- Genome haplotype assembly and assessment method☆11Updated last year
- ☆27Updated 4 months ago
- Phasing and scaffolding polyploid genomes based on Pore-C or Hi-C.☆22Updated this week
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆11Updated 3 months ago
- ☆10Updated last year
- This is a method to find telomeres and centromeres in plants.☆37Updated last year
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 6 months ago
- ☆20Updated 5 months ago
- ☆19Updated last year
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago