molevol-ub / bitacora
BITACORA: A Bioinformatics tool for gene family annotation
☆43Updated 10 months ago
Alternatives and similar repositories for bitacora:
Users that are interested in bitacora are comparing it to the libraries listed below
- A shiny application to visualize MCscan result☆35Updated 2 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆29Updated this week
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆65Updated 3 years ago
- ☆27Updated last year
- Genome Annotation Pipeline☆35Updated 6 months ago
- ☆43Updated 8 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- This is a method to find telomeres and centromeres in plants.☆38Updated last year
- ☆39Updated 2 years ago
- Plant genome assembly and annotation pipeline using snakemake☆40Updated last year
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆58Updated last month
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆43Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆30Updated 5 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 8 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆46Updated last year
- Computational Analysis of Gene Expression Evolution☆37Updated last week
- ☆39Updated last year
- A genome assembly assessment pipeline.☆37Updated last year
- A tool for performing collinearity-incorporating homology inference☆28Updated last year
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆25Updated 6 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆37Updated 5 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆52Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆73Updated this week
- A novel genome assembly pipeline based on deep learning☆60Updated 3 months ago