Quartet-based species tree and tree of blob estimation
☆14Feb 10, 2026Updated 3 weeks ago
Alternatives and similar repositories for TREE-QMC
Users that are interested in TREE-QMC are comparing it to the libraries listed below
Sorting:
- ☆15Aug 6, 2025Updated 7 months ago
- A genome assembly assessment pipeline.☆37Nov 20, 2023Updated 2 years ago
- ☆17Oct 21, 2024Updated last year
- ☆16Feb 20, 2024Updated 2 years ago
- Annotate Olfactory receptor CDS from genome☆10Apr 29, 2023Updated 2 years ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆21Mar 25, 2022Updated 3 years ago
- ☆22Oct 31, 2025Updated 4 months ago
- Foreign Contamination Screening - GX source code☆25Jun 9, 2025Updated 8 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated last year
- Renames headers in FASTA file☆12Jun 28, 2017Updated 8 years ago
- Scripts that used in our chicken T2T manuscript.☆22Jan 14, 2026Updated last month
- An R package to perform systematic quality checks on comparative genomics analyses☆12Jan 12, 2024Updated 2 years ago
- The complete sequence of a Chinese individual☆11Oct 8, 2024Updated last year
- ☆12Feb 16, 2026Updated 2 weeks ago
- Calculate the dn/ds (also pn and ps) value of cds☆13Jul 11, 2020Updated 5 years ago
- ☆13Apr 7, 2023Updated 2 years ago
- Figures for the CHM13 T2T SD paper.☆10Sep 12, 2021Updated 4 years ago
- ☆29Mar 4, 2022Updated 4 years ago
- An R package to infer and analyze synteny networks from protein sequences☆36Jul 23, 2025Updated 7 months ago
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- The MitoGeneExtractor can be used to extract protein coding mitochondrial genes, such as COI and others from short and long read sequenci…☆10Sep 24, 2025Updated 5 months ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated 10 months ago
- Some useful bioinformatics pipelines for genomics analysis☆14May 25, 2021Updated 4 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Sep 17, 2025Updated 5 months ago
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- A simple program for evaluate the assembly of a give genome.☆18Mar 3, 2023Updated 3 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Dec 29, 2022Updated 3 years ago
- ☆16Apr 3, 2023Updated 2 years ago
- parallelLastz: Running Lastz in parallel☆17Sep 13, 2024Updated last year
- R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)☆16Feb 16, 2026Updated 3 weeks ago
- wQFM implementation in Java☆18Mar 5, 2023Updated 3 years ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- a Sequencing Quality Assessment Tool☆17Jul 28, 2022Updated 3 years ago
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 8 months ago
- ☆16Jul 25, 2021Updated 4 years ago