☆15Jan 19, 2022Updated 4 years ago
Alternatives and similar repositories for WGSc
Users that are interested in WGSc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jun 13, 2020Updated 6 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- A genome assembly assessment pipeline.☆38Jun 5, 2026Updated last week
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 8 months ago
- repository for code used in analysis of open wild wheat consortium☆20Nov 23, 2021Updated 4 years ago
- Strand and WGD aware syntenic gene identification☆16Oct 16, 2025Updated 8 months ago
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.☆14Jun 6, 2026Updated last week
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- tomato graph pangenome☆92Dec 13, 2022Updated 3 years ago
- A de novo prediction tool of chromatin accessible regions for plant genomes☆10Aug 12, 2021Updated 4 years ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆38Oct 29, 2025Updated 7 months ago
- ☆17Jan 13, 2024Updated 2 years ago
- ☆31Nov 25, 2019Updated 6 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- ☆30Mar 4, 2022Updated 4 years ago
- The tools are used for displaying hic signal of genome☆26Jan 4, 2021Updated 5 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆208Aug 15, 2024Updated last year
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆10Dec 7, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆15Feb 15, 2022Updated 4 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated 11 months ago
- An ultra-fast gzip file tools☆27Apr 25, 2024Updated 2 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- ☆32Apr 7, 2025Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 5 years ago
- ☆17Nov 26, 2023Updated 2 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆49Sep 22, 2025Updated 8 months ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Structure variants calling and genotyping scripts for pan-Zea☆22Nov 17, 2022Updated 3 years ago
- ☆16Apr 3, 2023Updated 3 years ago
- ☆15Aug 6, 2025Updated 10 months ago
- ☆15Feb 1, 2023Updated 3 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27May 24, 2021Updated 5 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Differential k-mer analysis☆42Jan 29, 2024Updated 2 years ago