Alternatives and similar repositories for WGSc:

Users that are interested in WGSc are comparing it to the libraries listed below

• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆15Updated last week
• lardo / khaper
  ☆27Updated 2 years ago
• wushyer / RGAAT_v2
  Add multiple thread function for genome comparison
  ☆15Updated 3 years ago
• tangerzhang / calc_switchErr
  ☆24Updated 3 years ago
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 4 years ago
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆20Updated 3 months ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆25Updated 3 years ago
• LAILAB-CAU / update-Mo17
  ☆23Updated last year
• JM-SONG / GenomeSyn
  ☆22Updated 2 years ago
• dawelab / Ab10-Assembly
  B73Ab10 genome assembly methods
  ☆16Updated 2 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆18Updated 2 months ago
• wangziwei08 / LTR-insertion-time-estimation
  ☆15Updated last year
• schneebergerlab / GameteBinning
  ☆12Updated 4 years ago
• NBISweden / TransposonPSI
  TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…
  ☆13Updated 4 years ago
• c-zhou / polyGembler
  ☆15Updated 2 years ago
• csh3 / RegCloser
  RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…
  ☆13Updated 8 months ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 5 years ago
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆17Updated 11 months ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆23Updated 4 years ago
• sc-zhang / ALLHiC_components
  Some components that speed up and reduce resource cost for original ALLHiC
  ☆12Updated 10 months ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆20Updated 8 months ago
• jkimlab / DESCHRAMBLER
  ☆21Updated 10 months ago
• SunPengChuan / wgdi-example
  ☆15Updated last month
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆28Updated last year
• SwallowGenomics / BarnSwallow
  ☆13Updated last year
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆16Updated 6 years ago
• Adamtaranto / TRF2GFF
  Convert Tandem Repeat Finder dat file output into gff3 format
  ☆24Updated 3 weeks ago
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆20Updated 4 years ago
• caasivfbioinfo / Bol_pangenome
  ☆14Updated last year
• yilinZhang-bio / Watermelon-pangenome
  ☆19Updated last year