Alternatives and similar repositories for PopTEvo

Users that are interested in PopTEvo are comparing it to the libraries listed below

• dawelab / Ab10-Assembly
  B73Ab10 genome assembly methods
  ☆16Updated 3 years ago
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 4 years ago
• zlguu / Rice_Heterosis
  ☆15Updated last year
• 4ureliek / TEorthology
  Script to help assessing the evolutionary history of a TE family
  ☆16Updated 5 years ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆24Updated 4 years ago
• YaoZhou89 / WGSc
  ☆15Updated 3 years ago
• GaoLei-bio / SV
  ☆14Updated 3 years ago
• caasivfbioinfo / Bol_pangenome
  ☆15Updated last year
• SwallowGenomics / BarnSwallow
  ☆12Updated 2 years ago
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆17Updated last year
• weigelworld / pan-nlrome
  The GitHub repository for the A. thaliana pan-NLR'ome project.
  ☆17Updated 6 years ago
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆20Updated 8 months ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆23Updated last year
• mcsimenc / PhyLTR
  Phylogenetic Analysis of Long Terminal Repeat Retrotransposons
  ☆17Updated 2 years ago
• yiliao1022 / LASTZ_SV_pipeline
  ☆15Updated 5 years ago
• LAILAB-CAU / update-Mo17
  ☆25Updated 2 years ago
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated 3 weeks ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆30Updated 2 years ago
• yilinZhang-bio / Watermelon-pangenome
  ☆22Updated last year
• evotools / CattleGraphGenomePaper
  Set of script for the paper on the cattle graph genome
  ☆13Updated 2 years ago
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆23Updated last year
• jnarayan81 / parallelLastz
  parallelLastz: Running Lastz in parallel
  ☆16Updated 9 months ago
• Minglc / CisTrans-ECAS
  ☆10Updated last year
• wangziwei08 / LTR-insertion-time-estimation
  ☆16Updated 2 years ago
• andreaminio / AnnotationPipeline-EVM_based-DClab
  Cantù Lab @ UC Davis - Annotation pipeline - EVM based
  ☆14Updated 7 months ago
• maiziezhoulab / LRSV_combo
  Long Read Based SV Calling Tools Analysis
  ☆14Updated last year
• bpucker / MybMonday
  MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…
  ☆12Updated last month
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• guillemylla / Crickets_Genome_Annotation
  Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.
  ☆13Updated 3 years ago