oushujun / PopTEvoLinks
Study of TE evolution in a population of genomes
☆10Updated 2 years ago
Alternatives and similar repositories for PopTEvo
Users that are interested in PopTEvo are comparing it to the libraries listed below
Sorting:
- ☆27Updated 2 years ago
- Construct and Analyze the North American Vitis pangenome☆29Updated 4 months ago
- ☆31Updated 8 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆33Updated 2 months ago
- Scripts to do haplotype analysis on pan genomes.☆20Updated 5 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 4 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Updated 6 years ago
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Updated last year
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- ☆12Updated 2 years ago
- Inferring natural selection by comparative population genomic analysis across species☆25Updated 2 years ago
- SINE annotation tool for plant genomes☆18Updated last year
- ☆29Updated 2 years ago
- Script to help assessing the evolutionary history of a TE family☆16Updated 6 years ago
- ☆14Updated 3 years ago
- The tools are used for displaying hic signal of genome☆24Updated 5 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated 6 months ago
- Dynamic Elongation of a Genome Assembly Path☆23Updated 3 weeks ago
- plot genome alignment synteny☆21Updated 5 years ago
- issues for semina "Data Visulization"☆13Updated 2 weeks ago
- ☆16Updated 2 years ago
- A Hi-C scaffolding method☆22Updated 4 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- Whole Genome Annotation Pipeline☆16Updated 6 months ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆30Updated last month
- ☆11Updated 3 weeks ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago