oushujun / PopTEvoLinks
Study of TE evolution in a population of genomes
☆9Updated last year
Alternatives and similar repositories for PopTEvo
Users that are interested in PopTEvo are comparing it to the libraries listed below
Sorting:
- ☆22Updated last year
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- ☆14Updated 3 years ago
- SINE annotation tool for plant genomes☆17Updated last year
- ☆16Updated 9 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆30Updated 5 months ago
- ☆25Updated 2 years ago
- Whole Genome Annotation Pipeline☆17Updated 3 weeks ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- ☆15Updated last year
- The tools are used for displaying hic signal of genome☆24Updated 4 years ago
- Construct and Analyze the North American Vitis pangenome☆23Updated last year
- plot genome alignment synteny☆21Updated 5 years ago
- Script to help assessing the evolutionary history of a TE family☆16Updated 5 years ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Updated last week
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data☆13Updated 3 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆20Updated 6 years ago
- ☆15Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆27Updated 3 months ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Updated 5 years ago
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆17Updated 6 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated last month
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Updated last year
- Simple tools for working with Hi-C data☆18Updated 6 years ago