Farre-lab / syntenyPlotteRView external linksLinks
R package to draw syntenic plots in 3 different styles
☆45Feb 2, 2026Updated 2 weeks ago
Alternatives and similar repositories for syntenyPlotteR
Users that are interested in syntenyPlotteR are comparing it to the libraries listed below
Sorting:
- Genome alignment and synteny plots☆33Jun 5, 2023Updated 2 years ago
- ☆26Jan 26, 2026Updated 3 weeks ago
- parallelLastz: Running Lastz in parallel☆17Sep 13, 2024Updated last year
- ☆16Apr 3, 2023Updated 2 years ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Nov 20, 2023Updated 2 years ago
- Annotate Olfactory receptor CDS from genome☆10Apr 29, 2023Updated 2 years ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 2 months ago
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated last year
- SINE annotation tool for plant genomes☆18Jan 21, 2024Updated 2 years ago
- Tools for improving the sensitivity and specificity of genome alignments☆58Jan 17, 2024Updated 2 years ago
- Chromosome-level synteny plotting using orthologous regions☆31Sep 19, 2024Updated last year
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 2 years ago
- plot genome alignment synteny☆21May 25, 2020Updated 5 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Jan 11, 2021Updated 5 years ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- Detecting multi-genome synteny using minimizer graph mapping☆101Feb 9, 2026Updated last week
- ☆41Jun 8, 2023Updated 2 years ago
- Neural network classification of TE☆97Oct 9, 2025Updated 4 months ago
- ☆16Nov 19, 2025Updated 2 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 9 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- The complete sequence of a Chinese individual☆11Oct 8, 2024Updated last year
- ☆16Dec 25, 2024Updated last year
- ☆32Jan 3, 2025Updated last year
- read and analyse RepeatMasker output☆27May 22, 2023Updated 2 years ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆203Nov 23, 2025Updated 2 months ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- ☆18Jan 29, 2025Updated last year
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆55Jul 19, 2025Updated 6 months ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- ☆12Jun 7, 2024Updated last year
- A genome-scale, fast, and precise segmental duplications mapping tool☆35Sep 11, 2024Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆27Sep 16, 2025Updated 5 months ago
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆23Sep 5, 2025Updated 5 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Dec 7, 2022Updated 3 years ago
- ☆29Aug 1, 2023Updated 2 years ago
- A genome assembly assessment pipeline.☆37Nov 20, 2023Updated 2 years ago