Farre-lab / syntenyPlotteRLinks
R package to draw syntenic plots in 3 different styles
☆41Updated last year
Alternatives and similar repositories for syntenyPlotteR
Users that are interested in syntenyPlotteR are comparing it to the libraries listed below
Sorting:
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 3 months ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆39Updated 4 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 9 months ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year
- A genome assembly assessment pipeline.☆37Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- ☆9Updated 9 years ago
- ☆25Updated 2 years ago
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 11 months ago
- A simple program for evaluate the assembly of a give genome.☆18Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆38Updated last year
- ☆40Updated 2 years ago
- read and analyse RepeatMasker output☆24Updated 2 years ago
- ☆32Updated 9 months ago
- Transposable Elements MOvement detection using LOng reads☆22Updated last week
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Updated 3 years ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- Yet another Hi-C scaffolding tool☆20Updated 8 months ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago
- ☆24Updated last year
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago