Farre-lab / syntenyPlotteRLinks
R package to draw syntenic plots in 3 different styles
☆42Updated 4 months ago
Alternatives and similar repositories for syntenyPlotteR
Users that are interested in syntenyPlotteR are comparing it to the libraries listed below
Sorting:
- Genome alignment and synteny plots☆33Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 3 months ago
- Toolkit for evolutionary analyses of linkage groups☆33Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- Multi-genome synteny block visualization tool☆52Updated 2 months ago
- ☆24Updated last month
- read and analyse RepeatMasker output☆27Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 5 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Updated 5 years ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- ☆44Updated last year
- ☆41Updated 2 years ago
- ☆32Updated 11 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 3 months ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- ☆16Updated 6 years ago
- A simple program for evaluate the assembly of a give genome.☆18Updated 2 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- ☆35Updated 5 years ago
- Dynamic Elongation of a Genome Assembly Path☆23Updated last week
- ☆29Updated 2 weeks ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 3 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 10 months ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆44Updated last year