Farre-lab / syntenyPlotteRLinks
R package to draw syntenic plots in 3 different styles
☆42Updated 3 months ago
Alternatives and similar repositories for syntenyPlotteR
Users that are interested in syntenyPlotteR are comparing it to the libraries listed below
Sorting:
- Genome alignment and synteny plots☆33Updated 2 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆29Updated 2 months ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- read and analyse RepeatMasker output☆27Updated 2 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆23Updated 5 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated last month
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 9 months ago
- Multi-genome synteny block visualization tool☆49Updated last month
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- ☆41Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- ☆31Updated 11 months ago
- ☆18Updated 2 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 2 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 3 years ago
- ☆24Updated 3 weeks ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆35Updated 3 years ago
- ☆43Updated last year
- The IntroBlocker ancestry inference algorithm☆17Updated 2 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆44Updated last year
- Yet another Hi-C scaffolding tool☆22Updated last year
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year