shingocat / syntenyPlotByR
plot genome alignment synteny
☆21Updated 4 years ago
Alternatives and similar repositories for syntenyPlotByR:
Users that are interested in syntenyPlotByR are comparing it to the libraries listed below
- Genome alignment and synteny plots☆29Updated last year
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Updated 5 months ago
- ☆27Updated 3 years ago
- Yet another Hi-C scaffolding tool☆19Updated 5 months ago
- Domain based annotation of transposable elements☆19Updated 2 months ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago
- ☆24Updated last year
- ☆20Updated 7 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 5 months ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated 2 years ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆16Updated 4 months ago
- ☆22Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆24Updated last week
- The tools are used for displaying hic signal of genome☆23Updated 4 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆26Updated 3 years ago
- ☆27Updated 2 years ago
- ☆12Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆21Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆20Updated 4 years ago
- R package to draw syntenic plots in 3 different styles☆39Updated last year
- ☆16Updated 3 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last month
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆28Updated 2 months ago
- Pooled Sequencing Analysis for Sex Signal☆11Updated 3 years ago