Alternatives and similar repositories for syntenyPlotByR

Users that are interested in syntenyPlotByR are comparing it to the libraries listed below

• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated last month
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆30Updated 2 years ago
• andreaminio / AnnotationPipeline-EVM_based-DClab
  Cantù Lab @ UC Davis - Annotation pipeline - EVM based
  ☆14Updated 7 months ago
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆20Updated 8 months ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• tangerzhang / calc_switchErr
  ☆27Updated 2 months ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆21Updated 4 years ago
• NBISweden / TransposonPSI
  TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…
  ☆13Updated 5 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆20Updated 8 months ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆27Updated 3 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆23Updated 3 years ago
• harris-2374 / THEx
  Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.
  ☆14Updated last year
• lardo / khaper
  ☆28Updated 2 years ago
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆30Updated 2 months ago
• SwallowGenomics / BarnSwallow
  ☆12Updated 2 years ago
• linguoliang / puzzle-hi-c
  ☆16Updated 6 months ago
• c-zhou / polyGembler
  ☆16Updated 2 years ago
• lurebgi / BOPsexChr
  Analyses of sex chromosome evolution in songbirds
  ☆16Updated 6 years ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆24Updated 4 years ago
• esrice / hic-pipeline
  A pipeline for scaffolding a genome assembly using Hi-C
  ☆13Updated 2 years ago
• YaoZhou89 / WGSc
  ☆15Updated 3 years ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆31Updated 11 months ago
• rpianezza / GenomeDelta
  Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…
  ☆17Updated 7 months ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 10 months ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated 9 months ago
• BGI-Qingdao / TGS-GapCloser2
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆11Updated last year
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 4 years ago
• merlyescalona / yagcloser
  YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.
  ☆12Updated 2 years ago
• LAILAB-CAU / update-Mo17
  ☆25Updated 2 years ago