magspho / hifieval
a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
☆21Updated last year
Alternatives and similar repositories for hifieval:
Users that are interested in hifieval are comparing it to the libraries listed below
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 6 months ago
- Very simple and configurable all-in-one dotplot program☆12Updated 2 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆12Updated 2 years ago
- ☆17Updated last week
- Genome Assembly 102☆14Updated 3 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 10 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆18Updated last month
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 10 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 7 months ago
- ☆19Updated 4 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Simple tools for working with Hi-C data☆17Updated 6 years ago
- Prefix-renaming FASTA records really fast.☆17Updated 9 months ago
- Phasing reads with secondary alignments☆18Updated 4 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated last month
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- ☆23Updated 8 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated 11 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆16Updated 2 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 7 months ago
- ☆17Updated last month
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 4 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆9Updated 6 months ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆14Updated 2 years ago
- Better Alignments with Translated HMMER☆19Updated last week
- Extracts subgraphs or components from a graph in GFA format☆23Updated 5 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago