Alternatives and similar repositories for hifieval:

Users that are interested in hifieval are comparing it to the libraries listed below

• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆12Updated last year
• T2T-apes / ape_pangenome
  pangenome analyses for complete genomes of great apes (and gibbon)
  ☆17Updated 3 months ago
• pdishuck / GAVISUNK
  Genome Assembly Validation via Inter-SUNK distances in ONT reads
  ☆11Updated last year
• davidebolo1993 / cosigt
  ☆14Updated this week
• Wenfei-Xian / TIPP
  Telomere local assembly, Improved whole genome polish, and Plastid assembly
  ☆16Updated 2 weeks ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• marbl / training
  Genome Assembly 102
  ☆14Updated 2 weeks ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆17Updated 2 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 7 months ago
• at-cg / RAFT
  ☆21Updated 5 months ago
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆14Updated 4 months ago
• marbl / rukki
  Extracting paths from assembly graphs
  ☆22Updated 9 months ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆27Updated last year
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆16Updated 7 months ago
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆16Updated 6 years ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated 7 months ago
• kammoji / gapFinisher
  A reliable gap filling pipeline for draft genomes
  ☆11Updated 5 years ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆23Updated 10 months ago
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆19Updated 5 months ago
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆17Updated last year
• HuiyangYu / TGSFilter
  TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming
  ☆21Updated 8 months ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆26Updated 4 months ago
• esrice / trio_binning
  Programs implementing the trio-binning genome assembly method
  ☆19Updated last year
• institut-de-genomique / HAPO-G
  Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.
  ☆25Updated 10 months ago
• rebeccaserramari / polyploid-potato-assembly
  Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…
  ☆14Updated last year
• yoshihikosuzuki / ClassPro
  A K-mer classifier for HiFi reads
  ☆8Updated last year
• glogsdon1 / sunk-based_assembly
  ☆15Updated 3 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 6 years ago
• human-pangenomics / hprc-tutorials
  ☆14Updated 9 months ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year