magspho / hifievalLinks
a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
☆21Updated last year
Alternatives and similar repositories for hifieval
Users that are interested in hifieval are comparing it to the libraries listed below
Sorting:
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated last month
- ☆20Updated this week
- ☆24Updated 7 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆14Updated 2 years ago
- Genome Assembly 102☆14Updated 2 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 9 months ago
- ☆25Updated 10 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆19Updated 2 months ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Phasing reads with secondary alignments☆19Updated 7 months ago
- Prefix-renaming FASTA records really fast.☆17Updated last year
- Tandem Repeats Finder: a program to analyze DNA sequences☆16Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 4 months ago
- Consensus genome annotation using OMA☆26Updated 3 weeks ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆17Updated last year
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated last year
- recompute GFA link overlaps☆25Updated 2 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 7 months ago
- The MafFilter genome alignment processor☆19Updated 2 months ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- Extracting paths from assembly graphs☆23Updated last year
- ☆16Updated 3 weeks ago
- Identification of conserved non-coding sequences in plants☆21Updated 2 months ago
- Kmer Analysis of Pileups for Genotyping☆31Updated 3 weeks ago