magspho / hifievalLinks
a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
☆21Updated last year
Alternatives and similar repositories for hifieval
Users that are interested in hifieval are comparing it to the libraries listed below
Sorting:
- COsine-based SImilarity Genotyper using pangenomes☆21Updated this week
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 4 months ago
- Genome Assembly 102☆14Updated 6 months ago
- ☆28Updated last year
- A Hi-C scaffolding method☆22Updated 3 years ago
- ☆25Updated 2 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆21Updated 6 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Phasing reads with secondary alignments☆21Updated 11 months ago
- base-level dotplots from PAF alignments☆27Updated last month
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Updated last month
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated 4 months ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- recompute GFA link overlaps☆25Updated 3 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆25Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Updated 2 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 7 months ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆17Updated 3 months ago
- Consensus genome annotation using OMA☆27Updated 4 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Updated 2 years ago
- Prefix-renaming FASTA records really fast.☆16Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- SINE annotation tool for plant genomes☆18Updated last year
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- General purpose utility related to GAF files☆29Updated last month
- Tandem repeat genotyping with long reads☆32Updated last month
- Identification of segmental duplications in the genome☆27Updated 3 years ago