qiao-xin / DupGen_finderLinks
A pipeline used to identify different modes of duplicated gene pairs
☆110Updated 3 months ago
Alternatives and similar repositories for DupGen_finder
Users that are interested in DupGen_finder are comparing it to the libraries listed below
Sorting:
- ☆83Updated last year
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆100Updated 9 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84Updated 4 years ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆149Updated 2 weeks ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆102Updated last month
- Version 5 of the CAFE phylogenetics software☆150Updated 9 months ago
- NLR-Annotator upload☆73Updated 2 years ago
- This is the standalone version of the EviAnn pipeline☆127Updated this week
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆86Updated 10 months ago
- source code for EVM☆118Updated 11 months ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆99Updated 2 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 2 months ago
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆63Updated 6 years ago
- Neural network classification of TE☆96Updated last month
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆106Updated this week
- High-precision TE Annotator☆137Updated 3 weeks ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆179Updated last month
- Workflow for Building Microsynteny Networks☆58Updated 3 years ago
- tomato graph pangenome☆84Updated 2 years ago
- Reference-free profiling of polyploid genomes☆131Updated last month
- Genomic related tools☆72Updated 4 years ago
- Code to compute the XP-CLR statistic to infer natural selection☆100Updated 3 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆132Updated last year
- TransposonUltimate - a holistic set of tools for transposon identification☆84Updated 3 years ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆165Updated 4 months ago
- Collection of tools for the analysis of CpG data☆97Updated 4 months ago
- DNA序列比对结果 可视化展示工具☆56Updated 2 years ago
- Any Way to Show Multi genomic Synteny☆210Updated 4 months ago
- This is an archive version of old RepBase library (v20170127) for RepeatMasker.☆37Updated 4 years ago