esrice / PBJellyLinks
a fork of the gap-closing pipeline PBJelly
☆15Updated 6 years ago
Alternatives and similar repositories for PBJelly
Users that are interested in PBJelly are comparing it to the libraries listed below
Sorting:
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆21Updated 6 months ago
- SINE annotation tool for plant genomes☆18Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- A Hi-C scaffolding method☆22Updated 3 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated 4 months ago
- ☆17Updated 10 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 2 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆25Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- COsine-based SImilarity Genotyper using pangenomes☆21Updated this week
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- Domain based annotation of transposable elements☆20Updated 3 weeks ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Updated last month
- TD2☆22Updated 4 months ago
- ☆16Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆28Updated 4 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Phasing reads with secondary alignments☆21Updated 11 months ago
- ☆28Updated 6 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆28Updated 10 months ago
- Construct and Analyze the North American Vitis pangenome☆25Updated 2 months ago
- Genome alignment and synteny plots☆32Updated 2 years ago
- Inferring natural selection by comparative population genomic analysis across species☆25Updated 2 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- ☆16Updated 2 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 7 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Updated last year
- A pipeline for scaffolding a genome assembly using Hi-C☆13Updated 2 years ago