Alternatives and similar repositories for PBJelly:

Users that are interested in PBJelly are comparing it to the libraries listed below

• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆17Updated last year
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆23Updated 3 years ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• evotools / CattleGraphGenomePaper
  Set of script for the paper on the cattle graph genome
  ☆13Updated 2 years ago
• linguoliang / puzzle-hi-c
  ☆16Updated 3 months ago
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 4 years ago
• maiziezhoulab / LRSV_combo
  Long Read Based SV Calling Tools Analysis
  ☆13Updated last year
• HuiyangYu / TGSFilter
  TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming
  ☆21Updated 11 months ago
• oushujun / PopTEvo
  Study of TE evolution in a population of genomes
  ☆9Updated last year
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆23Updated last year
• glogsdon1 / sunk-based_assembly
  ☆15Updated 4 years ago
• BGI-Qingdao / TGS-GapCloser2
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆11Updated 11 months ago
• jnarayan81 / parallelLastz
  parallelLastz: Running Lastz in parallel
  ☆16Updated 7 months ago
• sc-zhang / ALLHiC_extensions
  Some components that speed up and reduce resource cost for original ALLHiC
  ☆13Updated 3 weeks ago
• csh3 / RegCloser
  RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…
  ☆13Updated 11 months ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆23Updated 4 years ago
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆17Updated 3 weeks ago
• Wenfei-Xian / TIPP
  Telomere local assembly, Improved whole genome polish, and Plastid assembly
  ☆18Updated 3 weeks ago
• xiekunwhy / kmerDedup
  Reduce genome assembly redundancy using shared mapped k-mer method.
  ☆13Updated last year
• njdbickhart / GoatAssemblyScripts
  A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly
  ☆11Updated 8 years ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated 2 months ago
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆17Updated 6 years ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆25Updated 3 years ago
• wtsi-hpag / scaffHiC
  Pipeline for genome scaffolding by modelling distributions of HiC pairs
  ☆10Updated 2 years ago
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆21Updated 4 years ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆12Updated 2 years ago
• c-zhou / polyGembler
  ☆16Updated 2 years ago
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆20Updated last month
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆30Updated last year