Alternatives and similar repositories for SRY

Users that are interested in SRY are comparing it to the libraries listed below

• baozg / phased-assembly-check
  ☆31Updated 9 months ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆43Updated last month
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• vgteam / giraffe-sv-paper
  ☆43Updated last year
• mrvollger / NucFreq
  ☆38Updated 3 weeks ago
• farhangus / Sniffles2_plot
  ☆31Updated last year
• shilpagarg / DipAsm
  ☆79Updated 5 years ago
• wangyibin / CPhasing
  C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.
  ☆65Updated 3 months ago
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆53Updated 4 months ago
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆42Updated last month
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• ablab / VerityMap
  ☆37Updated 2 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆35Updated 3 years ago
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆42Updated 2 years ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆53Updated 3 months ago
• maickrau / ribotin
  ☆36Updated 3 months ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆29Updated last year
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆39Updated 3 months ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆44Updated last week
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆14Updated 9 months ago
• shingocat / lrscaf
  TGS scaffolding
  ☆47Updated 3 years ago
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆34Updated last month
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated 2 weeks ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆33Updated 2 years ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆44Updated last year
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆42Updated 11 months ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆48Updated last year
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆52Updated 7 months ago