Alternatives and similar repositories for SRY

Users that are interested in SRY are comparing it to the libraries listed below

• baozg / phased-assembly-check
  ☆30Updated 6 months ago
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• mrvollger / NucFreq
  ☆37Updated last year
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆40Updated 7 months ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆49Updated last year
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆28Updated last year
• maickrau / ribotin
  ☆36Updated last week
• ablab / VerityMap
  ☆35Updated 2 years ago
• shilpagarg / DipAsm
  ☆76Updated 5 years ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆37Updated 6 years ago
• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆41Updated 2 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆36Updated last month
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆40Updated 3 months ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆51Updated last month
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆34Updated 3 years ago
• mrvollger / SafFire
  ☆30Updated 2 months ago
• kensung-lab / hypo-assembler
  ☆40Updated last month
• farhangus / Sniffles2_plot
  ☆31Updated 10 months ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated last week
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆30Updated 5 months ago
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆41Updated 5 months ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago