cchauve / ANGeSLinks
Reconstruction of ancestral genome maps
☆16Updated 7 years ago
Alternatives and similar repositories for ANGeS
Users that are interested in ANGeS are comparing it to the libraries listed below
Sorting:
- ☆31Updated 9 months ago
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- Dynamic Elongation of a Genome Assembly Path☆23Updated 3 weeks ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 7 years ago
- ☆24Updated last month
- Robust identification of orthologous Synteny with the Orthology Index☆36Updated 2 months ago
- ☆21Updated last year
- ☆12Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆25Updated 10 months ago
- ☆33Updated 9 months ago
- Toolkit for evolutionary analyses of linkage groups☆33Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆33Updated 2 months ago
- Fast and frugal disk based k-mer counter☆14Updated 4 years ago
- ☆32Updated last year
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- The IntroBlocker ancestry inference algorithm☆17Updated 2 years ago
- ☆16Updated 3 years ago
- ☆41Updated 2 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆34Updated 7 months ago
- ☆17Updated 3 weeks ago
- Domain based annotation of transposable elements☆21Updated 2 months ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 10 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 10 months ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Updated 3 years ago
- a Semi-automated pipeline for assembling T2T genome☆25Updated 2 months ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆40Updated last year