Alternatives and similar repositories for GenomeSyn:

Users that are interested in GenomeSyn are comparing it to the libraries listed below

• tangerzhang / calc_switchErr
  ☆27Updated 3 years ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 7 months ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆21Updated 10 months ago
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆18Updated last year
• lurebgi / chicken-T2T
  Scripts that used in our chicken T2T manuscript.
  ☆19Updated last year
• baozg / phased-assembly-check
  ☆29Updated 2 months ago
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆22Updated 3 weeks ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• simon19891216 / CentIER
  ☆29Updated 7 months ago
• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆23Updated 3 weeks ago
• ShiuLab / PseudogenePipeline
  ☆39Updated last year
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆28Updated 2 months ago
• Immortal2333 / Haplotype_Genome_Assembly
  Genome haplotype assembly and assessment method
  ☆12Updated last year
• JiaoLab2021 / EVG
  A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads
  ☆37Updated 9 months ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆37Updated 6 years ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆42Updated last year
• jkimlab / DESCHRAMBLER
  ☆22Updated last year
• LAILAB-CAU / update-Mo17
  ☆24Updated last year
• Zhanmengtao / bin
  scripts
  ☆15Updated 6 years ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• Argonum-Clever2 / mike
  ☆30Updated 2 weeks ago
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆39Updated last year
• Longhui-Ren / Ancestral_Genome_Reconstruction
  Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO
  ☆13Updated 6 years ago
• lurebgi / BOPsexChr
  Analyses of sex chromosome evolution in songbirds
  ☆15Updated 5 years ago
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆12Updated last year
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆38Updated 6 months ago
• yangqimeng99 / svlearn
  A machine learning-based genotyping tool for structural variation in short reads
  ☆12Updated this week
• likui345 / PGA
  ☆15Updated 3 years ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆29Updated last year