JM-SONG / GenomeSynLinks
☆28Updated 3 years ago
Alternatives and similar repositories for GenomeSyn
Users that are interested in GenomeSyn are comparing it to the libraries listed below
Sorting:
- Centromics: visualing centromeres with multiple omics data☆21Updated 2 years ago
- ☆31Updated 10 months ago
- Dynamic Elongation of a Genome Assembly Path☆25Updated last month
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- ☆21Updated last year
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆44Updated 4 months ago
- Centromics: visualing centromeres with multiple omics data☆25Updated 11 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆37Updated last year
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- a Semi-automated pipeline for assembling T2T genome☆25Updated 3 months ago
- ☆32Updated last year
- ☆44Updated 6 months ago
- ☆21Updated last year
- HiCAT new project☆31Updated 8 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Updated 3 months ago
- PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes☆24Updated 3 weeks ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 11 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆13Updated 6 years ago
- ☆33Updated 10 months ago
- ☆16Updated 4 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆32Updated 8 months ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 4 months ago
- Genome haplotype assembly and assessment method☆12Updated 2 years ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- Automated pipeline for running CoalHMM☆13Updated last month
- ☆44Updated last year
- ☆41Updated 2 years ago
- Scripts that used in our chicken T2T manuscript.☆22Updated 3 weeks ago