Centromics: visualing centromeres with multiple omics data
☆21Jan 18, 2024Updated 2 years ago
Alternatives and similar repositories for Centromics
Users that are interested in Centromics are comparing it to the libraries listed below
Sorting:
- Convert Tandem Repeat Finder dat file output into gff3 format☆31Nov 9, 2025Updated 4 months ago
- ☆86Jul 12, 2024Updated last year
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆13Mar 11, 2019Updated 7 years ago
- ☆22Feb 26, 2026Updated 3 weeks ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Sep 17, 2025Updated 6 months ago
- a Semi-automated pipeline for assembling T2T genome☆25Oct 16, 2025Updated 5 months ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆29Jan 17, 2024Updated 2 years ago
- A genome assembly assessment pipeline.☆38Nov 20, 2023Updated 2 years ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Oct 30, 2018Updated 7 years ago
- An R package to visualize chromosome scale repeat patterns and predict centromere locations.☆45Nov 1, 2025Updated 4 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Jul 26, 2023Updated 2 years ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆51Jan 16, 2024Updated 2 years ago
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Sep 22, 2025Updated 6 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 5 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Jul 13, 2020Updated 5 years ago
- Scripts that used in our chicken T2T manuscript.☆22Jan 14, 2026Updated 2 months ago
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Mar 5, 2018Updated 8 years ago
- ☆186Feb 10, 2026Updated last month
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆37Jun 6, 2022Updated 3 years ago
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 7 years ago
- NLR-Annotator upload☆76Jul 19, 2023Updated 2 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26May 18, 2024Updated last year
- ☆29Apr 16, 2023Updated 2 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 3 years ago
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆107Nov 17, 2025Updated 4 months ago
- tomato graph pangenome☆88Dec 13, 2022Updated 3 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- Make colorful identity heatmaps of genomic sequence☆128May 24, 2024Updated last year
- Some useful gadgets☆11Mar 14, 2022Updated 4 years ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆67Oct 23, 2025Updated 5 months ago
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆41Sep 4, 2018Updated 7 years ago
- Fast and frugal disk based k-mer counter☆14Apr 1, 2021Updated 4 years ago
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆23Sep 5, 2025Updated 6 months ago
- ☆42May 19, 2025Updated 10 months ago