Alternatives and similar repositories for Centromics

Users that are interested in Centromics are comparing it to the libraries listed below

• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆19Updated 2 weeks ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 9 months ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• Argonum-Clever2 / mike
  ☆29Updated last month
• tangerzhang / calc_switchErr
  ☆27Updated last month
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆22Updated 2 months ago
• ShiuLab / PseudogenePipeline
  ☆40Updated last year
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆37Updated 6 years ago
• Longhui-Ren / Ancestral_Genome_Reconstruction
  Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO
  ☆13Updated 6 years ago
• JM-SONG / GenomeSyn
  ☆25Updated 3 years ago
• liushoucheng / SPART
  a Semi-automated pipeline for assembling T2T genome
  ☆17Updated 3 weeks ago
• simon19891216 / CentIER
  ☆29Updated 8 months ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆21Updated last year
• xjtu-omics / HiCAT
  HiCAT new project
  ☆27Updated last year
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆44Updated last year
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆13Updated last year
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆29Updated 3 months ago
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆40Updated last year
• jkimlab / DESCHRAMBLER
  ☆23Updated last year
• symgenoevolab / SyntenyFinder
  SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…
  ☆30Updated 3 months ago
• i10labtitech / GINGER
  ☆28Updated last year
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆35Updated 8 months ago
• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆28Updated 2 months ago
• unavailable-2374 / Genome-Wide-Annotation-Pipeline
  This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.
  ☆24Updated last year
• kavonrtep / dante_ltr
  ☆10Updated 5 months ago
• amvarani / Plant_Annotation_TEs
  Methods and recipes for Plant Genome Annotation - Transposable Elements
  ☆18Updated 2 years ago
• Dee-chen / Tree2gd
  ☆40Updated 2 years ago
• lardo / khaper
  ☆27Updated 2 years ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆33Updated 3 months ago
• Zhanmengtao / bin
  scripts
  ☆16Updated 6 years ago