XuewenWangUGA / GMATALinks
Software GMATA for SSR mining, marker designing, genotyping, plot etc.
☆17Updated 3 months ago
Alternatives and similar repositories for GMATA
Users that are interested in GMATA are comparing it to the libraries listed below
Sorting:
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Updated last year
- ☆15Updated 4 years ago
- Simple tools for working with Hi-C data☆18Updated 7 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 4 months ago
- SINE annotation tool for plant genomes☆18Updated 2 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Updated 2 years ago
- chloroplast genome assembly using long reads data☆14Updated 6 months ago
- Diploid genome assembly analysis tools☆14Updated last year
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆20Updated 3 weeks ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Updated 5 years ago
- ☆16Updated 2 years ago
- a fork of the gap-closing pipeline PBJelly☆15Updated 7 years ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆20Updated 3 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Updated 9 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆30Updated 2 months ago
- The tools are used for displaying hic signal of genome☆24Updated 5 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- ☆22Updated last month
- ☆29Updated 3 years ago
- B73Ab10 genome assembly methods☆16Updated 4 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- A pipeline for genomic variant detection with genome assemblies at population scale☆36Updated 7 months ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated 2 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26Updated last year
- A nextflow pipeline for polishing CLR assemblies☆18Updated 2 years ago
- Estimating gene family turnover rates by likelihood-based methods☆12Updated 5 years ago
- ☆12Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆33Updated 5 years ago
- ☆29Updated 2 years ago