XuewenWangUGA / GMATA
Software GMATA for SSR mining, marker designing, genotyping, plot etc.
☆14Updated 9 months ago
Alternatives and similar repositories for GMATA:
Users that are interested in GMATA are comparing it to the libraries listed below
- ☆15Updated 3 years ago
- The tools are used for displaying hic signal of genome☆23Updated 4 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last month
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 7 months ago
- ☆24Updated 2 years ago
- ☆16Updated 4 months ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- ☆15Updated 5 years ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- Study of TE evolution in a population of genomes☆9Updated last year
- ☆27Updated last month
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- Construct and Analyze the North American Vitis pangenome☆23Updated last year
- ☆15Updated 2 years ago
- Yet another Hi-C scaffolding tool☆19Updated 6 months ago
- ☆14Updated last year
- SINE annotation tool for plant genomes☆17Updated last year
- Centromics: visualing centromeres with multiple omics data☆22Updated 2 months ago
- plot genome alignment synteny☆21Updated 4 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- issues for semina "Data Visulization"☆13Updated last month
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆13Updated last year
- Script to help assessing the evolutionary history of a TE family☆16Updated 5 years ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- ☆14Updated 5 years ago