XuewenWangUGA / GMATA
Software GMATA for SSR mining, marker designing, genotyping, plot etc.
☆13Updated 6 months ago
Alternatives and similar repositories for GMATA:
Users that are interested in GMATA are comparing it to the libraries listed below
- The tools are used for displaying hic signal of genome☆23Updated 4 years ago
- ☆16Updated 3 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆13Updated 9 months ago
- ☆23Updated last year
- ☆15Updated last year
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago
- ☆15Updated 2 months ago
- SINE annotation tool for plant genomes☆17Updated last year
- Construct and Analyze the North American Vitis pangenome☆22Updated last year
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 4 months ago
- Plant genome assembly and annotation pipeline using snakemake☆38Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆22Updated 4 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last month
- chloroplast genome assembly using long reads data☆11Updated last year
- ☆16Updated last month
- ☆12Updated 4 years ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- Yet another Hi-C scaffolding tool☆19Updated 3 months ago
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Updated 11 months ago
- Simple tools for working with Hi-C data☆16Updated 6 years ago
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆17Updated 7 months ago
- ☆20Updated last year
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 5 years ago
- ☆11Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆20Updated 4 years ago