yangli557 / AnnoSINELinks
SINE annotation tool for plant genomes
☆17Updated last year
Alternatives and similar repositories for AnnoSINE
Users that are interested in AnnoSINE are comparing it to the libraries listed below
Sorting:
- A Hi-C scaffolding method☆23Updated 3 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Construct and Analyze the North American Vitis pangenome☆23Updated last year
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆19Updated 2 months ago
- a fork of the gap-closing pipeline PBJelly☆14Updated 6 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 2 weeks ago
- plot genome alignment synteny☆21Updated 5 years ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆27Updated 3 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated last year
- T2Tools is a toolset contains several tools for plant T2T assembly, and it is under development.☆14Updated 2 months ago
- Identification of conserved non-coding sequences in plants☆21Updated 2 months ago
- ☆16Updated 6 months ago
- parallelLastz: Running Lastz in parallel☆16Updated 10 months ago
- Domain based annotation of transposable elements☆19Updated 2 months ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated 3 weeks ago
- The tools are used for displaying hic signal of genome☆24Updated 4 years ago
- ☆20Updated this week
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 9 months ago
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Updated last year
- ☆15Updated 3 years ago
- ☆15Updated 4 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 4 months ago
- Study of TE evolution in a population of genomes☆9Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Updated last week