Alternatives and similar repositories for AnnoSINE

Users that are interested in AnnoSINE are comparing it to the libraries listed below

• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆24Updated last year
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 4 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆23Updated 3 years ago
• oushujun / PopTEvo
  Study of TE evolution in a population of genomes
  ☆9Updated last year
• Wenfei-Xian / TIPP
  Telomere local assembly, Improved whole genome polish, and Plastid assembly
  ☆21Updated 3 months ago
• idanefroni / Conservatory
  Identification of conserved non-coding sequences in plants
  ☆21Updated 3 months ago
• yilinZhang-bio / Watermelon-pangenome
  ☆23Updated last year
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated last month
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆18Updated 6 years ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆30Updated 2 years ago
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆20Updated 10 months ago
• tangerzhang / calc_switchErr
  ☆27Updated 4 months ago
• HuiyangYu / TGSFilter
  TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming
  ☆21Updated last year
• esrice / PBJelly
  a fork of the gap-closing pipeline PBJelly
  ☆14Updated 6 years ago
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆21Updated 5 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• YaoZhou89 / WGSc
  ☆15Updated 3 years ago
• jnarayan81 / parallelLastz
  parallelLastz: Running Lastz in parallel
  ☆15Updated 10 months ago
• wangziwei08 / LTR-insertion-time-estimation
  ☆16Updated 2 years ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆23Updated last year
• sc-zhang / ALLHiC_extensions
  Some components that speed up and reduce resource cost for original ALLHiC
  ☆14Updated last month
• sc-zhang / T2Tools
  T2Tools is a toolset contains several tools for plant T2T assembly, and it is under development.
  ☆14Updated 2 months ago
• davidebolo1993 / cosigt
  ☆20Updated this week
• HuiyangYu / HFKReads
  An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction
  ☆19Updated last year
• dawelab / Ab10-Assembly
  B73Ab10 genome assembly methods
  ☆16Updated 3 years ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆20Updated 2 months ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆19Updated 8 months ago
• yiliao1022 / SVGAP
  A pipeline for genomic variant detection with genome assemblies at population scale
  ☆21Updated 2 months ago
• glogsdon1 / sunk-based_assembly
  ☆15Updated 4 years ago