Alternatives and similar repositories for AnnoSINE

Users that are interested in AnnoSINE are comparing it to the libraries listed below

• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆23Updated 3 years ago
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 4 years ago
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated 3 weeks ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆30Updated 2 years ago
• linguoliang / puzzle-hi-c
  ☆16Updated 6 months ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• idanefroni / Conservatory
  Identification of conserved non-coding sequences in plants
  ☆20Updated last month
• HuiyangYu / TGSFilter
  TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming
  ☆21Updated last year
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• Wenfei-Xian / TIPP
  Telomere local assembly, Improved whole genome polish, and Plastid assembly
  ☆18Updated 2 months ago
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆23Updated last year
• sc-zhang / ALLHiC_extensions
  Some components that speed up and reduce resource cost for original ALLHiC
  ☆14Updated last week
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆20Updated 8 months ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• jnarayan81 / parallelLastz
  parallelLastz: Running Lastz in parallel
  ☆16Updated 9 months ago
• NBISweden / TransposonPSI
  TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…
  ☆13Updated 5 years ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated last month
• sc-zhang / T2Tools
  T2Tools is a toolset contains several tools for plant T2T assembly, and it is under development.
  ☆13Updated last month
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆18Updated 6 years ago
• wangziwei08 / LTR-insertion-time-estimation
  ☆16Updated 2 years ago
• oushujun / PopTEvo
  Study of TE evolution in a population of genomes
  ☆9Updated last year
• YaoZhou89 / WGSc
  ☆15Updated 3 years ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆24Updated 4 years ago
• BGI-Qingdao / TGS-GapCloser2
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆11Updated last year
• mcsimenc / PhyLTR
  Phylogenetic Analysis of Long Terminal Repeat Retrotransposons
  ☆17Updated 2 years ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆23Updated last year
• isugifNF / polishCLR
  A nextflow pipeline for polishing CLR assemblies
  ☆17Updated 2 years ago
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆20Updated 3 months ago
• davidebolo1993 / cosigt
  ☆20Updated last week
• institut-de-genomique / HAPO-G
  Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.
  ☆25Updated last year