Alternatives and similar repositories for AnnoSINE:

Users that are interested in AnnoSINE are comparing it to the libraries listed below

• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 4 years ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆27Updated last year
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆21Updated last year
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 6 years ago
• evotools / CattleGraphGenomePaper
  Set of script for the paper on the cattle graph genome
  ☆13Updated 2 years ago
• jnarayan81 / parallelLastz
  parallelLastz: Running Lastz in parallel
  ☆15Updated 4 months ago
• Wenfei-Xian / TIPP
  Telomere local assembly, Improved whole genome polish, and Plastid assembly
  ☆16Updated 2 weeks ago
• YaoZhou89 / WGSc
  ☆16Updated 3 years ago
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆15Updated last week
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆23Updated 4 years ago
• c-zhou / polyGembler
  ☆15Updated 2 years ago
• NBISweden / TransposonPSI
  TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…
  ☆13Updated 4 years ago
• sc-zhang / ALLHiC_components
  Some components that speed up and reduce resource cost for original ALLHiC
  ☆12Updated 11 months ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 5 years ago
• glogsdon1 / sunk-based_assembly
  ☆15Updated 3 years ago
• rebeccaserramari / polyploid-potato-assembly
  Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…
  ☆14Updated last year
• HuiyangYu / TGSFilter
  TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming
  ☆21Updated 8 months ago
• dawelab / Ab10-Assembly
  B73Ab10 genome assembly methods
  ☆16Updated 3 years ago
• wangziwei08 / LTR-insertion-time-estimation
  ☆15Updated last year
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆25Updated 3 years ago
• mcsimenc / PhyLTR
  Phylogenetic Analysis of Long Terminal Repeat Retrotransposons
  ☆17Updated 2 years ago
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆20Updated 3 months ago
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆25Updated last month
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆20Updated 4 years ago
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆20Updated 4 years ago
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆16Updated 6 years ago
• linguoliang / puzzle-hi-c
  ☆15Updated last month
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated this week