Metacells - Single-cell RNA Sequencing Analysis
☆130Sep 4, 2026Updated 3 weeks ago
Alternatives and similar repositories for metacells
Users that are interested in metacells are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A shiny app for metacell analysis☆11Updated this week
- Metacell - Single-cell mRNA Analysis☆123Aug 25, 2026Updated last month
- Coarse-graining of large single-cell RNA-seq data into metacells☆110Apr 16, 2026Updated 5 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆199Aug 24, 2026Updated last month
- A tool for semi-automatic cell type classification☆505May 22, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- CellRank: dynamics from multi-view single-cell data☆456Sep 16, 2026Updated last week
- Reference mapping for single-cell genomics☆411Jun 26, 2026Updated 3 months ago
- Doublet detection in single-cell RNA-seq data.☆99Feb 6, 2025Updated last year
- ☆15Jan 24, 2024Updated 2 years ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆487Jun 6, 2025Updated last year
- A package to help convert different single-cell data formats to each other☆471Feb 20, 2026Updated 7 months ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Jun 29, 2026Updated 2 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆152Feb 20, 2025Updated last year
- Non-parametric density inference for single-cell analysis.☆76Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This is the alpha version of the CellOracle package☆501Apr 30, 2026Updated 4 months ago
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated 2 years ago
- ☆17Nov 13, 2021Updated 4 years ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- A tool for semi-automatic cell type harmonization and integration☆121Mar 9, 2026Updated 6 months ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆510Jul 26, 2026Updated 2 months ago
- ☆60Nov 1, 2024Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆680Updated this week
- LIANA: a LIgand-receptor ANalysis frAmework☆250Aug 7, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Detect doublets in single-cell RNA-seq data☆179Dec 29, 2020Updated 5 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆126Apr 26, 2025Updated last year
- Interpretation of cell states using reference single-cell maps☆326Dec 19, 2025Updated 9 months ago
- R implementation of GeneTrajectory☆72May 9, 2026Updated 4 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆266Jul 8, 2026Updated 2 months ago
- RNA Velocity generalized through dynamical modeling☆512Feb 25, 2026Updated 7 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated last month
- Batch balanced KNN☆181Oct 11, 2023Updated 2 years ago
- Single-cell epigenomics analysis tools☆325Sep 12, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆198Updated this week
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆204Jan 30, 2026Updated 7 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆122Aug 24, 2026Updated last month
- Benchmarking analysis of data integration tools☆432Apr 27, 2026Updated 5 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆86Jul 25, 2025Updated last year
- Multiome GRN inference.☆144Apr 10, 2026Updated 5 months ago
- Predict RNA velocity through deep learning☆74Dec 12, 2023Updated 2 years ago