tanaylab / metacellsLinks
Metacells - Single-cell RNA Sequencing Analysis
☆108Updated 9 months ago
Alternatives and similar repositories for metacells
Users that are interested in metacells are comparing it to the libraries listed below
Sorting:
- Metacell - Single-cell mRNA Analysis☆115Updated 5 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆77Updated 3 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆72Updated 4 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆61Updated last week
- Analysis of cell-cell communication at single-cell resolution☆101Updated 10 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆131Updated 4 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆110Updated 2 months ago
- R implementation of GeneTrajectory☆59Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆164Updated 3 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆74Updated 5 months ago
- ☆79Updated last week
- Multi-omic velocity inference☆110Updated 8 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated this week
- ☆122Updated 3 years ago
- trajectory inference☆104Updated 5 months ago
- A tool for semi-automatic cell type harmonization and integration☆108Updated 3 months ago
- Predict RNA velocity through deep learning☆70Updated last year
- inferring regulatory cellular dynamics☆48Updated last week
- Single-Cell Clustering Assessment Framework☆103Updated last year
- ☆116Updated 2 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆64Updated 3 years ago
- Spatial transcriptomics of heart tissue☆88Updated last year
- Non-parametric density inference for single-cell analysis.☆72Updated last month
- ☆130Updated last year
- Single-cell Lung Cancer Atlas with 1.2M cells☆64Updated 5 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Gene group activity utility functions for Scanpy☆79Updated 6 months ago
- R package for pathway analysis in scRNA-seq data☆75Updated 10 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆109Updated 5 months ago