Metacells - Single-cell RNA Sequencing Analysis
☆127Apr 20, 2026Updated 3 months ago
Alternatives and similar repositories for metacells
Users that are interested in metacells are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A shiny app for metacell analysis☆11Jun 1, 2026Updated last month
- Metacell - Single-cell mRNA Analysis☆121Jul 15, 2026Updated last week
- Coarse-graining of large single-cell RNA-seq data into metacells☆104Apr 16, 2026Updated 3 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆194Mar 27, 2025Updated last year
- A tool for semi-automatic cell type classification☆497May 22, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- CellRank: dynamics from multi-view single-cell data☆454Jul 16, 2026Updated last week
- Reference mapping for single-cell genomics☆406Jun 26, 2026Updated last month
- Doublet detection in single-cell RNA-seq data.☆98Feb 6, 2025Updated last year
- ☆14Jan 24, 2024Updated 2 years ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆478Jun 6, 2025Updated last year
- A package to help convert different single-cell data formats to each other☆473Feb 20, 2026Updated 5 months ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Jun 29, 2026Updated 3 weeks ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆152Feb 20, 2025Updated last year
- Non-parametric density inference for single-cell analysis.☆75Jun 29, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- ☆17Nov 13, 2021Updated 4 years ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- A tool for semi-automatic cell type harmonization and integration☆120Mar 9, 2026Updated 4 months ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆505Updated this week
- ☆59Nov 1, 2024Updated last year
- This is the alpha version of the CellOracle package☆478Apr 30, 2026Updated 2 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆245Aug 7, 2024Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆665Jun 1, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Detect doublets in single-cell RNA-seq data☆180Dec 29, 2020Updated 5 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆124Apr 26, 2025Updated last year
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 7 months ago
- R implementation of GeneTrajectory☆71May 9, 2026Updated 2 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆262Jul 8, 2026Updated 2 weeks ago
- RNA Velocity generalized through dynamical modeling☆507Feb 25, 2026Updated 5 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆440May 11, 2026Updated 2 months ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆195Updated this week
- Batch balanced KNN☆180Oct 11, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Single-cell epigenomics analysis tools☆323Updated this week
- Gene regulatory network containing signed transcription factor-target gene interactions☆113May 27, 2025Updated last year
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆202Jan 30, 2026Updated 5 months ago
- Benchmarking analysis of data integration tools☆426Apr 27, 2026Updated 3 months ago
- Multiome GRN inference.☆141Apr 10, 2026Updated 3 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆83Jul 25, 2025Updated last year
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆70Jul 9, 2026Updated 2 weeks ago