cellgeni / schardLinks
reticulate-free single cell format conversion
☆187Updated last week
Alternatives and similar repositories for schard
Users that are interested in schard are comparing it to the libraries listed below
Sorting:
- Significance analysis for clustering single-cell RNA-sequencing data☆119Updated last year
- ☆176Updated 4 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆163Updated last month
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- scDIOR: Single cell data IO softwaRe☆148Updated 3 years ago
- Conversion between scRNA-seq objects☆187Updated last month
- Gene set scoring for single-cell data☆165Updated this week
- LIANA: a LIgand-receptor ANalysis frAmework☆218Updated last year
- Methods for detecting doublets in single-cell sequencing data☆209Updated last month
- AUCell: score single cells with gene regulatory networks☆169Updated last year
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆208Updated last month
- Clustering scRNAseq by genotypes☆189Updated 10 months ago
- A Bayesian model for compositional single-cell data analysis☆176Updated 2 years ago
- Scissor package☆237Updated last year
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 11 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆230Updated 2 years ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆166Updated 2 years ago
- ☆173Updated 3 weeks ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆168Updated 6 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆172Updated 6 months ago
- ☆253Updated last year
- Scaling Single Cell Analysis to Millions of Cells☆224Updated this week
- Some tools for plotting single-cell data☆175Updated 4 months ago
- The integration of single cell rank-based gene set enrichment analysis☆133Updated 3 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆112Updated last month
- Quantifying metabolism activity at the single-cell resolution☆140Updated 3 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆295Updated 2 years ago
- BANKSY: spatial clustering☆121Updated last month
- Cell type prioritization in single-cell data☆125Updated 11 months ago