cellgeni / schardLinks
reticulate-free single cell format conversion
☆180Updated 3 weeks ago
Alternatives and similar repositories for schard
Users that are interested in schard are comparing it to the libraries listed below
Sorting:
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆152Updated last week
- ☆173Updated 3 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆118Updated 11 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- scDIOR: Single cell data IO softwaRe☆145Updated 3 years ago
- Conversion between scRNA-seq objects☆183Updated 2 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆205Updated 2 weeks ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆161Updated 4 months ago
- Quantifying metabolism activity at the single-cell resolution☆137Updated last month
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆164Updated 2 years ago
- A Bayesian model for compositional single-cell data analysis☆172Updated 2 years ago
- Methods for detecting doublets in single-cell sequencing data☆205Updated 2 weeks ago
- The integration of single cell rank-based gene set enrichment analysis☆130Updated last month
- ☆247Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆213Updated last year
- A tool for detecting somatic variants in single cell data☆212Updated 11 months ago
- Scissor package☆231Updated last year
- BANKSY: spatial clustering☆119Updated last week
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆165Updated 4 months ago
- Cell type prioritization in single-cell data☆124Updated 10 months ago
- AUCell: score single cells with gene regulatory networks☆164Updated last year
- Scaling Single Cell Analysis to Millions of Cells☆223Updated 2 weeks ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- ☆109Updated last year
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 9 months ago
- Clustering scRNAseq by genotypes☆188Updated 9 months ago
- Gene set scoring for single-cell data☆159Updated 3 months ago
- ☆160Updated last week
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆231Updated 2 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆208Updated last year