Alternatives and similar repositories for schard

Users that are interested in schard are comparing it to the libraries listed below

• neurorestore / Libra
  ☆173Updated 2 months ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆180Updated last month
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆117Updated 10 months ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆150Updated 6 months ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆144Updated 3 years ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆139Updated 3 years ago
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆162Updated 2 years ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆212Updated 11 months ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated 2 years ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆170Updated 2 years ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆201Updated last week
• wu-yc / scMetabolism
  Quantifying metabolism activity at the single-cell resolution
  ☆137Updated last month
• sunduanchen / Scissor
  Scissor package
  ☆226Updated last year
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆158Updated 2 months ago
• digitalcytometry / cytotrace2
  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
  ☆157Updated 4 months ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆230Updated 2 years ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆131Updated 8 months ago
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆160Updated last year
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆203Updated 2 weeks ago
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆173Updated 2 months ago
• navinlabcode / copykat
  ☆247Updated last year
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆164Updated 4 months ago
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆187Updated 8 months ago
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆122Updated 9 months ago
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆220Updated this week
• huayc09 / SeuratExtend
  ☆157Updated 2 weeks ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆211Updated 10 months ago
• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆128Updated 3 weeks ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆187Updated 8 months ago
• digitalcytometry / ecotyper
  EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
  ☆206Updated last year