tuonglab / dandelionLinks
dandelion - A single cell BCR/TCR V(D)J-seq analysis package
☆123Updated this week
Alternatives and similar repositories for dandelion
Users that are interested in dandelion are comparing it to the libraries listed below
Sorting:
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆161Updated last week
- R package to access DoRothEA's regulons☆154Updated last year
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆127Updated 8 months ago
- Tools for single-cell data processing☆131Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆114Updated last year
- A tool for semi-automatic cell type harmonization and integration☆117Updated 2 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated last year
- ☆87Updated last week
- SCSA: cell type annotation for single-cell RNA-seq data☆94Updated 2 years ago
- Clonotype Neighbor Graph Analysis☆93Updated 5 months ago
- A docker image for single-cell analysis☆103Updated 3 months ago
- R package for Pathway RespOnsive GENe activity inference☆113Updated 2 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆126Updated 2 months ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆86Updated last year
- trajectory inference☆105Updated last year
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆75Updated 7 months ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆88Updated this week
- Metacells - Single-cell RNA Sequencing Analysis☆116Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆98Updated 2 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆79Updated last month
- software to detect doublets☆95Updated last year
- ☆71Updated last year
- Convert between AnnData and SingleCellExperiment☆143Updated last week
- Analysis of cell-cell communication at single-cell resolution☆106Updated last year
- scDIOR: Single cell data IO softwaRe☆153Updated 3 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆104Updated last month
- A Shiny web app for mapping datasets using Seurat v4☆143Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 9 months ago