immunogenomics / TiRPLinks
code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm. (2022)
☆13Updated 10 months ago
Alternatives and similar repositories for TiRP
Users that are interested in TiRP are comparing it to the libraries listed below
Sorting:
- Gene group activity utility functions for Scanpy☆97Updated 11 months ago
- Single cell omics biology annotations☆50Updated 7 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 2 months ago
- ☆39Updated 5 months ago
- Mapping the Functional Landscape of TCR Repertoire☆35Updated 4 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆23Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 10 months ago
- ☆45Updated last year
- ☆56Updated last year
- Single-Cell Inference of Class Switch Recombination☆20Updated 2 weeks ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 4 months ago
- R implementation of GeneTrajectory☆65Updated last year
- ☆59Updated 5 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆28Updated 3 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 11 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆23Updated 2 months ago
- ☆60Updated last year
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- iterative clustering pipeline of big single cell datasets.☆35Updated 2 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆34Updated 3 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 9 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 8 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Functional Inference of Gene Regulation☆49Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Updated 4 years ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated 3 weeks ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆20Updated this week