code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm. (2022)
☆14Jan 28, 2025Updated last year
Alternatives and similar repositories for TiRP
Users that are interested in TiRP are comparing it to the libraries listed below
Sorting:
- ☆41Aug 18, 2020Updated 5 years ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Updated this week
- ☆41Jun 24, 2025Updated 8 months ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆64Mar 12, 2026Updated last week
- SpatialCorr: Identify gene sets with spatially varying correlation☆18Jan 2, 2024Updated 2 years ago
- flexible CDR based distance metrics☆71Dec 16, 2025Updated 3 months ago
- ☆16Sep 21, 2021Updated 4 years ago
- 🗂️ Git-based TCR database storage & management. Submissions welcome!☆153Updated this week
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Jan 15, 2023Updated 3 years ago
- Ultrafast TCR clustering algorithm based on geometric isometry☆74Oct 16, 2024Updated last year
- ANS_signature_scoring: A gene expression signature scoring Python package.☆18Jan 18, 2026Updated 2 months ago
- Reproducibility Repo for mvTCR paper☆13Apr 2, 2024Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆106Dec 18, 2025Updated 3 months ago
- ☆13Jun 24, 2019Updated 6 years ago
- ☆14Mar 11, 2022Updated 4 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆59May 4, 2022Updated 3 years ago
- Interactive applications of stlearn☆15May 1, 2023Updated 2 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆122Sep 16, 2025Updated 6 months ago
- Hierarchical Cell Annotation☆27Nov 17, 2024Updated last year
- convert a blast output to a bed file☆12Jun 19, 2015Updated 10 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆36Mar 29, 2022Updated 3 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆30Jul 12, 2025Updated 8 months ago
- T/B cell receptor sequencing analysis notes☆276Dec 1, 2024Updated last year
- A package code for fitting power law distributions using Bayesian or Maximum Likelihood approaches.☆12Aug 1, 2019Updated 6 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆28May 16, 2024Updated last year
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- ☆12Mar 28, 2025Updated 11 months ago
- Count HLA alleles in single-cell RNA-seq data☆63Nov 5, 2021Updated 4 years ago
- ☆56Nov 1, 2024Updated last year
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Sep 21, 2020Updated 5 years ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 8 years ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆51Nov 1, 2025Updated 4 months ago
- ☆14Oct 16, 2025Updated 5 months ago
- R package for pathway analysis in scRNA-seq data☆78Aug 17, 2024Updated last year
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆20Updated this week
- R API and htmlwidget for Vitessce☆44Aug 13, 2025Updated 7 months ago
- ☆10Oct 15, 2025Updated 5 months ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆29Aug 20, 2024Updated last year