code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm. (2022)
☆13Jan 28, 2025Updated last year
Alternatives and similar repositories for TiRP
Users that are interested in TiRP are comparing it to the libraries listed below
Sorting:
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆64Aug 19, 2025Updated 6 months ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆18Jan 2, 2024Updated 2 years ago
- ☆16Sep 21, 2021Updated 4 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆17Jan 18, 2026Updated last month
- ☆41Jun 24, 2025Updated 8 months ago
- ☆41Aug 18, 2020Updated 5 years ago
- Ultrafast TCR clustering algorithm based on geometric isometry☆73Oct 16, 2024Updated last year
- Interactive applications of stlearn☆15May 1, 2023Updated 2 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Jan 15, 2023Updated 3 years ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Updated this week
- Hierarchical Cell Annotation☆27Nov 17, 2024Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆28May 16, 2024Updated last year
- Highly specific clustering of T cell receptor CDR3s☆43Jun 21, 2022Updated 3 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆106Dec 18, 2025Updated 2 months ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆59May 4, 2022Updated 3 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆30Jul 12, 2025Updated 7 months ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆28Aug 20, 2024Updated last year
- Count HLA alleles in single-cell RNA-seq data☆63Nov 5, 2021Updated 4 years ago
- flexible CDR based distance metrics☆71Dec 16, 2025Updated 2 months ago
- T/B cell receptor sequencing analysis notes☆276Dec 1, 2024Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated 11 months ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆123Sep 16, 2025Updated 5 months ago
- R package for pathway analysis in scRNA-seq data☆77Aug 17, 2024Updated last year
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆36Mar 29, 2022Updated 3 years ago
- iterative clustering pipeline of big single cell datasets.☆36Sep 5, 2025Updated 5 months ago
- ☆12Mar 28, 2025Updated 11 months ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆38Sep 17, 2025Updated 5 months ago
- LLMRouterBench: A Massive Benchmark and Unified Framework for LLM Routing☆38Jan 30, 2026Updated last month
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆10Updated this week
- R API and htmlwidget for Vitessce☆44Aug 13, 2025Updated 6 months ago
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 4 years ago
- 🗂️ [vdjdb.com is up and running!] Git-based TCR database storage & management. Submissions welcome!☆152Feb 22, 2026Updated last week
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆236Feb 12, 2026Updated 2 weeks ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Oct 6, 2021Updated 4 years ago
- ☆45Jun 27, 2023Updated 2 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆88Dec 4, 2025Updated 2 months ago
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆12Feb 12, 2026Updated 2 weeks ago
- Step by step tutorial for CAGE analysis☆10Sep 18, 2025Updated 5 months ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago