code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm. (2022)
☆14Jan 28, 2025Updated last year
Alternatives and similar repositories for TiRP
Users that are interested in TiRP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆41Aug 18, 2020Updated 6 years ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Updated this week
- ☆40Jun 24, 2025Updated last year
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆71Mar 12, 2026Updated 6 months ago
- flexible CDR based distance metrics☆75Dec 16, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- SpatialCorr: Identify gene sets with spatially varying correlation☆18Jan 2, 2024Updated 2 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆20Jan 18, 2026Updated 8 months ago
- ☆15Sep 21, 2021Updated 5 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆22Jan 15, 2023Updated 3 years ago
- ☆13Jun 24, 2019Updated 7 years ago
- Ultrafast TCR clustering algorithm based on geometric isometry☆76Oct 16, 2024Updated last year
- Reproducibility Repo for mvTCR paper☆14Apr 2, 2024Updated 2 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆117Dec 18, 2025Updated 9 months ago
- The single T cell annotation tool for scRNA-seq data☆30Apr 25, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆14Mar 11, 2022Updated 4 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆123Sep 16, 2025Updated last year
- Large language modeling applied to T-cell receptor (TCR) sequences.☆61May 4, 2022Updated 4 years ago
- Interactive applications of stlearn☆16May 1, 2023Updated 3 years ago
- convert a blast output to a bed file☆12Jun 19, 2015Updated 11 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆31Jul 12, 2025Updated last year
- ☆15Jul 16, 2026Updated 2 months ago
- single cell Gene co-Expression Network Analysis☆10Sep 6, 2022Updated 4 years ago
- T/B cell receptor sequencing analysis notes☆285Dec 1, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 5 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆37Mar 29, 2022Updated 4 years ago
- A package code for fitting power law distributions using Bayesian or Maximum Likelihood approaches.☆12Aug 1, 2019Updated 7 years ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 9 years ago
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Sep 21, 2020Updated 6 years ago
- ☆60Nov 1, 2024Updated last year
- Hierarchical Cell Annotation☆32Nov 17, 2024Updated last year
- Count HLA alleles in single-cell RNA-seq data☆64Nov 5, 2021Updated 4 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆51Sep 10, 2026Updated last month
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆30Aug 20, 2024Updated 2 years ago
- LLM-Driven Multi-Agent Framework for Automated scRNA-Seq Data Analysis:The LLM-driven multi-agent framework for single-cell RNA sequencin…☆20Jun 11, 2026Updated 4 months ago
- VDJ Clonotyping & Analysis Tools☆50Mar 7, 2025Updated last year
- ☆13Mar 28, 2025Updated last year
- R package for pathway analysis in scRNA-seq data☆82Aug 17, 2024Updated 2 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆30May 16, 2024Updated 2 years ago