immunogenomics / TiRPLinks
code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm. (2022)
☆13Updated 5 months ago
Alternatives and similar repositories for TiRP
Users that are interested in TiRP are comparing it to the libraries listed below
Sorting:
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 3 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago
- ☆36Updated this week
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 3 weeks ago
- ☆32Updated 5 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- Single-Cell Inference of Class Switch Recombination☆19Updated 3 months ago
- ☆30Updated 2 years ago
- Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.☆17Updated this week
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated 2 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- ☆49Updated 10 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 5 months ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last year
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated 11 months ago
- ☆13Updated 3 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 5 months ago
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago
- Single cell omics biology annotations☆51Updated 2 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 4 months ago
- ☆45Updated last year