immunogenomics / TiRPLinks
code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm. (2022)
☆13Updated last year
Alternatives and similar repositories for TiRP
Users that are interested in TiRP are comparing it to the libraries listed below
Sorting:
- ☆41Updated 7 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last week
- cell type deconvolution for multi-condition bulk RNA-seq data☆31Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 4 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆28Updated last year
- Single cell omics biology annotations☆53Updated 9 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 11 months ago
- Gene group activity utility functions for Scanpy☆100Updated last year
- ☆63Updated 2 years ago
- ☆47Updated last year
- ☆56Updated last year
- Functional Inference of Gene Regulation☆51Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Updated 4 years ago
- R package IReNA☆29Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Mapping the Functional Landscape of TCR Repertoire☆35Updated 4 years ago
- scWGCNA☆61Updated 3 years ago
- ☆62Updated 2 months ago
- ACTIONet single-cell analysis framework☆44Updated last year
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆33Updated last month
- ☆32Updated 6 months ago
- iterative clustering pipeline of big single cell datasets.☆36Updated 5 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Updated 5 months ago
- ☆24Updated 3 months ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆21Updated 9 months ago
- Single-Cell Inference of Class Switch Recombination☆20Updated last week