JonathanShor / DoubletDetectionLinks
Doublet detection in single-cell RNA-seq data.
☆97Updated last year
Alternatives and similar repositories for DoubletDetection
Users that are interested in DoubletDetection are comparing it to the libraries listed below
Sorting:
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago
- R implementation of MULTI-seq sample classification workflow☆66Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- ☆69Updated 7 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 9 months ago
- ☆71Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- ☆59Updated last year
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆79Updated 2 months ago
- Single Cell Cluster Evaluation☆99Updated 4 years ago
- Tools for single-cell data processing☆132Updated last year
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆111Updated 2 months ago
- ☆57Updated 7 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆80Updated 2 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated 2 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated last year
- Mouse cell atlas☆61Updated 5 years ago
- Clone of the Bioconductor repository for the scran package.☆46Updated last year
- Single Cell Analysis of Five'Ends☆50Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆83Updated 3 years ago
- Single-cell RNA-seq Gene Expression Recovery☆115Updated last year
- ☆75Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆106Updated last year
- Scanpy use cases.☆90Updated 5 years ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆77Updated last month
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago