Alternatives and similar repositories for SComatic

Users that are interested in SComatic are comparing it to the libraries listed below

• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆139Updated 3 years ago
• navinlabcode / copykat
  ☆235Updated 11 months ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆147Updated 4 months ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆279Updated 2 years ago
• neurorestore / Libra
  ☆169Updated 3 weeks ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆154Updated 5 months ago
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆158Updated 2 years ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆227Updated 2 years ago
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆163Updated last year
• aertslab / scenicplus
  SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…
  ☆224Updated 4 months ago
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆126Updated last year
• hbctraining / Investigating-chromatin-biology-ChIPseq
  ☆92Updated 3 weeks ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆140Updated 3 years ago
• digitalcytometry / ecotyper
  EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
  ☆201Updated last year
• JiekaiLab / scTE
  ☆107Updated last year
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆174Updated 10 months ago
• huayc09 / SeuratExtend
  ☆139Updated this week
• dviraran / xCell
  Cell types enrichment analysis
  ☆197Updated last year
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆204Updated 9 months ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆258Updated last week
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆215Updated 4 months ago
• sunduanchen / Scissor
  Scissor package
  ☆222Updated last year
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆195Updated last week
• fl-yu / CUT-RUNTools-2.0
  CUT&RUN and CUT&Tag data processing and analysis
  ☆109Updated 2 months ago
• mdozmorov / scATAC-seq_notes
  scATAC-seq data analysis tools and papers
  ☆109Updated last year
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆181Updated 6 months ago
• kharchenkolab / numbat
  Haplotype-aware CNV analysis from single-cell RNA-seq
  ☆181Updated 2 weeks ago
• kaizhang / SnapATAC2
  Single-cell epigenomics analysis tools
  ☆260Updated this week
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆283Updated 2 years ago
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆160Updated 2 months ago