A tool for detecting somatic variants in single cell data
☆228Sep 15, 2024Updated 2 years ago
Alternatives and similar repositories for SComatic
Users that are interested in SComatic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆233Feb 4, 2026Updated 9 months ago
- SNV calling from single cell sequencing☆119Nov 11, 2024Updated 2 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆174Sep 29, 2026Updated last month
- ☆316Jun 16, 2026Updated 4 months ago
- Inferring CNV from Single-Cell RNA-Seq☆686Oct 31, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year
- A tool for semi-automatic cell type classification☆519Updated this week
- Gene group activity utility functions for Scanpy☆119Dec 21, 2024Updated last year
- Single-Cell Genotyping Tool☆216Updated this week
- single cell recurrence based variant analysis☆12Dec 13, 2022Updated 3 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated 2 months ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆33Mar 10, 2023Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆84Jun 9, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆205Aug 12, 2025Updated last year
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆58Oct 12, 2026Updated last month
- NicheNet: predict active ligand-target links between interacting cells☆689Nov 5, 2026Updated last week
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆127Jan 22, 2024Updated 2 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆494Nov 5, 2026Updated last week
- ☆16Sep 1, 2023Updated 3 years ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆488Apr 11, 2026Updated 7 months ago
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 3 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆44Dec 1, 2025Updated 11 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- LIANA: a LIgand-receptor ANalysis frAmework☆253Aug 7, 2024Updated 2 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆129Updated this week
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆349Apr 23, 2024Updated 2 years ago
- ☆137Aug 23, 2026Updated 2 months ago
- AUCell: score single cells with gene regulatory networks☆208Mar 9, 2024Updated 2 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆271Jul 8, 2026Updated 4 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆103Dec 8, 2022Updated 3 years ago
- High dimensional weighted gene co-expression network analysis☆495Jun 16, 2026Updated 4 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆153Feb 20, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆94Aug 29, 2025Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆58Sep 24, 2026Updated last month
- trajectory inference☆108Jan 27, 2025Updated last year
- Next-Gen Sequencing tools from the Horvath Lab☆46Jan 6, 2026Updated 10 months ago
- Methods to discover gene programs on single-cell data☆214Oct 12, 2026Updated last month
- R package to infer biological activities from omics data using a collection of methods.☆314Nov 5, 2026Updated last week
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆270Jan 16, 2026Updated 9 months ago
Are these results useful?