cortes-ciriano-lab / SComaticLinks
A tool for detecting somatic variants in single cell data
☆212Updated last year
Alternatives and similar repositories for SComatic
Users that are interested in SComatic are comparing it to the libraries listed below
Sorting:
- scDIOR: Single cell data IO softwaRe☆146Updated 3 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- ☆250Updated last year
- Clustering scRNAseq by genotypes☆189Updated 10 months ago
- ☆110Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆291Updated 2 years ago
- Analysis pipeline for ATAC-seq data☆76Updated last year
- Haplotype-aware CNV analysis from single-cell RNA-seq☆190Updated last month
- ☆174Updated 4 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆231Updated 2 years ago
- scATAC-seq data analysis tools and papers☆120Updated 2 months ago
- my notes for scATACseq analysis☆132Updated last year
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆233Updated 7 months ago
- ☆171Updated last week
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆166Updated 2 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆210Updated last year
- reticulate-free single cell format conversion☆184Updated last month
- CUT&RUN and CUT&Tag data processing and analysis☆111Updated 6 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆167Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆159Updated last month
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆165Updated 5 months ago
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆204Updated 3 months ago
- chromatin Variability Across Regions (of the genome!)☆181Updated last year
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- AUCell: score single cells with gene regulatory networks☆167Updated last year
- Conversion between scRNA-seq objects☆184Updated 3 weeks ago
- Detect doublets in single-cell RNA-seq data☆155Updated 4 years ago
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆109Updated 2 weeks ago
- Scissor package☆236Updated last year
- Cell types enrichment analysis☆200Updated last year