aerickso / SpatialInferCNV
Clone Calling from Visium Spatial Transcriptomics of Cancer samples
☆61Updated 2 years ago
Alternatives and similar repositories for SpatialInferCNV:
Users that are interested in SpatialInferCNV are comparing it to the libraries listed below
- ☆59Updated 5 years ago
- Construct Tumor Transition Zone Microenvironment☆39Updated 2 months ago
- R package for pathway analysis in scRNA-seq data☆69Updated 5 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆71Updated 2 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Single Cell Analysis Operations☆13Updated 10 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆49Updated 4 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆93Updated last year
- Analysis of cell-cell communication at single-cell resolution☆100Updated 5 months ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆90Updated 5 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆47Updated last year
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆43Updated 3 years ago
- Functions for single cell data analysis☆29Updated 3 years ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆46Updated 2 months ago
- ☆20Updated last year
- ☆49Updated 4 months ago
- ☆30Updated 2 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 2 years ago
- Methods for decontamination of single cell data☆37Updated 2 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆56Updated 4 months ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆54Updated 2 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆77Updated last year
- A R package for advanced single cell data viz☆63Updated last year
- Senescent Cell Identification☆30Updated 11 months ago
- Mollecular Functional Portraits☆36Updated 10 months ago
- Draw phylogenetic trees of tumor evolution☆74Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- ☆28Updated last year
- The integration of single cell rank-based gene set enrichment analysis☆119Updated 6 months ago
- R package for semi-supervised single-cell data integration☆79Updated last year