Alternatives and similar repositories for SpatialInferCNV

Users that are interested in SpatialInferCNV are comparing it to the libraries listed below

• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆130Updated last year
• 10XGenomics / HumanColonCancer_VisiumHD
  Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…
  ☆109Updated 7 months ago
• navinlabcode / CellTrek
  ☆127Updated 3 years ago
• prabhakarlab / Banksy
  BANKSY: spatial clustering
  ☆133Updated 3 months ago
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆78Updated 5 months ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆49Updated 6 months ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆77Updated last year
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆57Updated last month
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆114Updated 8 months ago
• ccruizm / GBmap
  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…
  ☆65Updated 3 years ago
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆85Updated 2 years ago
• Sanofi-Public / enact-pipeline
  Repository for ENACT pipeline for end-to-end analysis of Visium HD data
  ☆71Updated 7 months ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆80Updated 5 months ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆105Updated last year
• Lan-lab / sc-GC
  ☆32Updated 3 years ago
• Coolgenome / TCM
  Codes used in pan-T cell analysis
  ☆64Updated 2 years ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆60Updated 2 weeks ago
• aliceygao / pan-Fibroblast
  ☆55Updated last year
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆94Updated 3 weeks ago
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆96Updated 4 years ago
• jlaffy / scalop
  Single Cell Analysis Operations
  ☆13Updated last month
• QiangShiPKU / CoVarNet
  ☆54Updated 5 months ago
• data2intelligence / CytoSig
  ☆60Updated last week
• zijianni / SpotClean
  R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data
  ☆34Updated last year
• PaulingLiu / ROGUE
  Assessing the purity of single cell population
  ☆140Updated 3 years ago
• BostonGene / MFP
  Mollecular Functional Portraits
  ☆43Updated last year
• YMa-lab / CARD
  ☆129Updated last year
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆54Updated 3 weeks ago
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆137Updated 10 months ago
• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆53Updated 4 years ago