Clone Calling from Visium Spatial Transcriptomics of Cancer samples
☆102Dec 8, 2022Updated 3 years ago
Alternatives and similar repositories for SpatialInferCNV
Users that are interested in SpatialInferCNV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆314Jun 16, 2026Updated 4 months ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆135May 29, 2025Updated last year
- Construct Tumor Transition Zone Microenvironment☆61Jun 25, 2025Updated last year
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 3 years ago
- Inferring CNV from Single-Cell RNA-Seq☆686Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆200Updated this week
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆482Apr 11, 2026Updated 6 months ago
- ☆136Aug 23, 2026Updated 2 months ago
- ☆14Jun 1, 2026Updated 4 months ago
- ☆150Jun 25, 2026Updated 4 months ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆105Feb 11, 2026Updated 8 months ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆140Sep 6, 2024Updated 2 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆138Sep 24, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆52Aug 18, 2025Updated last year
- Code for spatial subclone paper☆19Jan 23, 2025Updated last year
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆491Jan 22, 2026Updated 9 months ago
- Multiview Intercellular SpaTial modeling framework☆74Jan 15, 2026Updated 9 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆172May 6, 2025Updated last year
- Spatial Transcriptomics Capture Location Deconvolution☆216Oct 20, 2025Updated last year
- Spatially resolved transcriptomic analysis☆68Nov 17, 2022Updated 3 years ago
- ☆30Feb 20, 2025Updated last year
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆191Jan 8, 2026Updated 9 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Spatial transcriptomics of heart tissue☆114Oct 7, 2023Updated 3 years ago
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆232Feb 4, 2026Updated 8 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆203Aug 12, 2025Updated last year
- Spatial omics analysis toolbox☆394Updated this week
- Gene group activity utility functions for Scanpy☆118Dec 21, 2024Updated last year
- Profile purification of single-cell spatial transcriptomics data☆67Jun 29, 2026Updated 4 months ago
- BANKSY: spatial clustering☆170Updated this week
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆102Apr 30, 2026Updated 5 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆30Jul 22, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆161Aug 3, 2025Updated last year
- ☆137Feb 11, 2024Updated 2 years ago
- Methods to discover gene programs on single-cell data☆212Oct 12, 2026Updated 2 weeks ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆683Mar 11, 2026Updated 7 months ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆66Dec 7, 2022Updated 3 years ago
- Spatial Cellular Estimator for Tumors☆66Sep 27, 2026Updated last month
- ☆60Feb 23, 2024Updated 2 years ago