Clone Calling from Visium Spatial Transcriptomics of Cancer samples
☆101Dec 8, 2022Updated 3 years ago
Alternatives and similar repositories for SpatialInferCNV
Users that are interested in SpatialInferCNV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆133May 29, 2025Updated last year
- Inferring CNV from Single-Cell RNA-Seq☆685Nov 14, 2025Updated 10 months ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆198Updated this week
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 3 years ago
- ☆305Jun 16, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆135Aug 23, 2026Updated 3 weeks ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆30Jul 22, 2024Updated 2 years ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Jun 29, 2026Updated 2 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆470Apr 11, 2026Updated 5 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆51Aug 18, 2025Updated last year
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆139Sep 6, 2024Updated 2 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …