Alternatives and similar repositories for SpatialInferCNV:

Users that are interested in SpatialInferCNV are comparing it to the libraries listed below

• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆52Updated last week
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆39Updated 3 years ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆102Updated last week
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆103Updated 7 months ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆73Updated 8 months ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆42Updated 5 months ago
• ccruizm / GBmap
  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…
  ☆54Updated 2 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆64Updated 6 months ago
• data2intelligence / CytoSig
  ☆50Updated 7 months ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated 2 weeks ago
• jlaffy / scalop
  Single Cell Analysis Operations
  ☆13Updated last month
• Coolgenome / iTALK
  ☆60Updated 5 years ago
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆79Updated last year
• chloelulu / scMayoMap
  ☆21Updated last year
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆81Updated last month
• aliceygao / pan-Fibroblast
  ☆41Updated 8 months ago
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆72Updated 5 months ago
• Coolgenome / TCM
  Codes used in pan-T cell analysis
  ☆58Updated 2 years ago
• BostonGene / MFP
  Mollecular Functional Portraits
  ☆40Updated last year
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆110Updated last week
• Lan-lab / sc-GC
  ☆30Updated 2 years ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆104Updated 2 years ago
• youqiongye / CRC_scRNAseq
  ☆45Updated 3 years ago
• Sanofi-Public / enact-pipeline
  Repository for ENACT pipeline for end-to-end analysis of Visium HD data
  ☆44Updated 3 weeks ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆100Updated 7 months ago
• bio-Pixel / panVC
  ☆48Updated last year
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆66Updated last year
• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆114Updated last week
• zijianni / SpotClean
  R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data
  ☆31Updated 10 months ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆31Updated 3 years ago