aerickso / SpatialInferCNVLinks
Clone Calling from Visium Spatial Transcriptomics of Cancer samples
☆86Updated 2 years ago
Alternatives and similar repositories for SpatialInferCNV
Users that are interested in SpatialInferCNV are comparing it to the libraries listed below
Sorting:
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆129Updated last year
- Construct Tumor Transition Zone Microenvironment☆49Updated 5 months ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆104Updated 5 months ago
- ☆126Updated 3 years ago
- BANKSY: spatial clustering☆130Updated last month
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last week
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆110Updated 7 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated 2 years ago
- Single Cell Analysis Operations☆13Updated last week
- Mollecular Functional Portraits☆43Updated last year
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 4 months ago
- Assessing the purity of single cell population☆137Updated 3 years ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Updated 2 years ago
- R package for semi-supervised single-cell data integration☆90Updated 3 months ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆53Updated 4 years ago
- ☆49Updated 4 months ago
- ☆53Updated last year
- ☆38Updated 8 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆77Updated 3 months ago
- Codes used in pan-T cell analysis☆64Updated 2 years ago
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆71Updated 5 months ago
- Codes for the scPLC project☆71Updated 3 years ago
- The integration of single cell rank-based gene set enrichment analysis☆140Updated 5 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- Spatial Cellular Estimator for Tumors☆60Updated 2 weeks ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- ☆31Updated 3 years ago
- ☆63Updated 6 years ago
- ☆22Updated last year