aerickso / SpatialInferCNVLinks
Clone Calling from Visium Spatial Transcriptomics of Cancer samples
☆78Updated 2 years ago
Alternatives and similar repositories for SpatialInferCNV
Users that are interested in SpatialInferCNV are comparing it to the libraries listed below
Sorting:
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆124Updated last year
- ☆125Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Construct Tumor Transition Zone Microenvironment☆48Updated 2 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 4 months ago
- BANKSY: spatial clustering☆120Updated last month
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆109Updated 4 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated last month
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆94Updated 3 months ago
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆62Updated 3 months ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆61Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆132Updated 6 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated last year
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Assessing the purity of single cell population☆135Updated 3 years ago
- Single Cell Analysis Operations☆13Updated 6 months ago
- ☆30Updated 5 months ago
- ☆56Updated 11 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated last month
- Codes for the scPLC project☆68Updated 2 years ago
- Codes used in pan-T cell analysis☆63Updated 2 years ago
- A tool for semi-automatic cell type harmonization and integration☆110Updated 5 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆52Updated 8 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- R package for semi-supervised single-cell data integration☆88Updated last month
- Mollecular Functional Portraits☆43Updated last year
- ☆48Updated last year
- ☆31Updated 3 years ago