aerickso / SpatialInferCNVLinks
Clone Calling from Visium Spatial Transcriptomics of Cancer samples
☆74Updated 2 years ago
Alternatives and similar repositories for SpatialInferCNV
Users that are interested in SpatialInferCNV are comparing it to the libraries listed below
Sorting:
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆119Updated 10 months ago
- R package for pathway analysis in scRNA-seq data☆75Updated 11 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆55Updated 3 months ago
- ☆124Updated 3 years ago
- Construct Tumor Transition Zone Microenvironment☆48Updated last month
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆107Updated 3 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆76Updated last week
- BANKSY: spatial clustering☆118Updated last week
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 9 months ago
- ☆55Updated 10 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆83Updated last year
- ☆61Updated 6 years ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆88Updated last month
- R package for semi-supervised single-cell data integration☆86Updated 2 months ago
- Assessing the purity of single cell population☆131Updated 3 years ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆58Updated 2 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆56Updated last month
- Analysis of cell-cell communication at single-cell resolution☆103Updated 10 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 4 months ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆95Updated 4 years ago
- Mollecular Functional Portraits☆42Updated last year
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆51Updated 4 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆105Updated 2 years ago
- A tool for semi-automatic cell type harmonization and integration☆108Updated 4 months ago
- Spatial Cellular Estimator for Tumors☆56Updated last week
- ☆25Updated 4 months ago
- R package for Protein activity analysis of single-cell RNAseq.☆83Updated 2 years ago
- ☆30Updated 5 months ago