Alternatives and similar repositories for SpatialInferCNV

Users that are interested in SpatialInferCNV are comparing it to the libraries listed below

• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆43Updated 6 months ago
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆52Updated last month
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆65Updated 7 months ago
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆39Updated 3 years ago
• Coolgenome / iTALK
  ☆61Updated 5 years ago
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆112Updated 8 months ago
• BostonGene / MFP
  Mollecular Functional Portraits
  ☆40Updated last year
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆81Updated last year
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆74Updated 9 months ago
• data2intelligence / CytoSig
  ☆50Updated 8 months ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated last month
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆104Updated last month
• ccruizm / GBmap
  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…
  ☆56Updated 2 years ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆101Updated 8 months ago
• jlaffy / scalop
  Single Cell Analysis Operations
  ☆13Updated 2 months ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆82Updated 2 weeks ago
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆67Updated last year
• wagnerlab-berkeley / Compass
  ☆21Updated 2 months ago
• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆49Updated 3 years ago
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆74Updated 2 months ago
• navinlabcode / CellTrek
  ☆119Updated 3 years ago
• aliceygao / pan-Fibroblast
  ☆42Updated 9 months ago
• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆117Updated last month
• Coolgenome / TCM
  Codes used in pan-T cell analysis
  ☆59Updated 2 years ago
• zijianni / SpotClean
  R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data
  ☆33Updated 11 months ago
• 10XGenomics / HumanColonCancer_VisiumHD
  Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…
  ☆66Updated last month
• ChanLab-UTSW / BreastCancer_Integrated
  ☆30Updated 3 months ago
• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆123Updated 10 months ago
• youqiongye / CRC_scRNAseq
  ☆45Updated 3 years ago
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆61Updated 3 years ago