Alternatives and similar repositories for scATOMIC

Users that are interested in scATOMIC are comparing it to the libraries listed below

• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆76Updated last year
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆90Updated last week
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆92Updated 7 months ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆92Updated last week
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆88Updated 2 weeks ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆134Updated 5 months ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆80Updated 4 months ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆99Updated last year
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆68Updated last year
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆45Updated last month
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆64Updated 3 years ago
• KChen-lab / METAFlux
  ☆80Updated last year
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆83Updated 9 months ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆75Updated last month
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆111Updated 2 years ago
• morris-lab / Capybara
  Capybara: A computational tool to measure cell identity and fate transitions
  ☆60Updated 3 years ago
• alserglab / mascarade
  Generate masks for scRNA-seq clusters on t-SNE or UMAP plots
  ☆39Updated this week
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆105Updated last year
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆95Updated 2 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• xleizi / easySCF
  ☆48Updated 2 months ago
• KlugerLab / DAseq
  ☆41Updated 4 years ago
• pachterlab / voyager
  From geospatial to spatial -omics
  ☆100Updated 3 weeks ago
• lhe17 / nebula
  ☆45Updated last month
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆97Updated last year
• zijianni / SpotClean
  R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data
  ☆34Updated last year
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆31Updated last year
• Coolgenome / iTALK
  ☆64Updated 6 years ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆112Updated 8 months ago
• cssmillie / ulcerative_colitis
  ☆63Updated 5 years ago