abelson-lab / scATOMICLinks
Pan-Cancer Single Cell Classifier
☆81Updated last year
Alternatives and similar repositories for scATOMIC
Users that are interested in scATOMIC are comparing it to the libraries listed below
Sorting:
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 5 months ago
- Unified access to several second-generation deconvolution methods☆88Updated last month
- scGSVA: Perform GSVA for single cell RNA seq☆67Updated last year
- R package for semi-supervised single-cell data integration☆90Updated 3 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated 3 weeks ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆131Updated 4 months ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆77Updated 3 months ago
- scWGCNA☆61Updated 3 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- ☆78Updated last year
- R package for Pathway RespOnsive GENe activity inference☆111Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆38Updated 2 weeks ago
- Gene group activity utility functions for Scanpy☆97Updated 11 months ago
- From geospatial to spatial -omics☆99Updated last week
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- ☆41Updated 4 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated 3 weeks ago
- ☆64Updated 6 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated this week
- ☆57Updated last year
- Framework for sensitive DE testing (using neighbourhoods)☆75Updated 3 weeks ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆81Updated 8 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆112Updated last month
- ☆48Updated last month
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆59Updated last year