abelson-lab / scATOMICLinks
Pan-Cancer Single Cell Classifier
☆81Updated last year
Alternatives and similar repositories for scATOMIC
Users that are interested in scATOMIC are comparing it to the libraries listed below
Sorting:
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Unified access to several second-generation deconvolution methods☆87Updated 2 weeks ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 4 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆67Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆90Updated 5 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆131Updated 3 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 3 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated last week
- R package for Pathway RespOnsive GENe activity inference☆111Updated 2 years ago
- scWGCNA☆61Updated 3 years ago
- ☆77Updated last year
- R package for semi-supervised single-cell data integration☆90Updated 3 months ago
- Gene group activity utility functions for Scanpy☆95Updated 10 months ago
- ☆41Updated 4 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆81Updated 7 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆80Updated 10 months ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆75Updated last week
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆113Updated 2 months ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆80Updated last week
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆68Updated last year
- ☆62Updated 6 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆128Updated last year
- Methods for decontamination of single cell data☆50Updated 9 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆28Updated 3 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated last year