abelson-lab / scATOMICLinks
Pan-Cancer Single Cell Classifier
☆79Updated last year
Alternatives and similar repositories for scATOMIC
Users that are interested in scATOMIC are comparing it to the libraries listed below
Sorting:
- Coarse-graining of large single-cell RNA-seq data into metacells☆89Updated 3 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 4 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆127Updated 2 months ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- R package for semi-supervised single-cell data integration☆90Updated last month
- Unified access to several second-generation deconvolution methods☆78Updated this week
- scGSVA: Perform GSVA for single cell RNA seq☆65Updated 11 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆42Updated this week
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆80Updated 6 months ago
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
- ☆73Updated last year
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- ☆94Updated 3 weeks ago
- scWGCNA☆61Updated 2 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year
- Framework for sensitive DE testing (using neighbourhoods)☆72Updated last year
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆68Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆113Updated last month
- Single-cell Lung Cancer Atlas with 1.2M cells☆69Updated 8 months ago
- Gene group activity utility functions for Scanpy☆90Updated 9 months ago
- Functional Inference of Gene Regulation☆46Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 9 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆93Updated last week
- ☆63Updated 5 years ago
- ☆58Updated last year