abelson-lab / scATOMICLinks
Pan-Cancer Single Cell Classifier
☆82Updated last year
Alternatives and similar repositories for scATOMIC
Users that are interested in scATOMIC are comparing it to the libraries listed below
Sorting:
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 5 months ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 3 months ago
- Unified access to several second-generation deconvolution methods☆79Updated 3 weeks ago
- ☆76Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆131Updated 3 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
- Gene group activity utility functions for Scanpy☆93Updated 10 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆65Updated 11 months ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆33Updated 5 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆42Updated 3 weeks ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆80Updated 7 months ago
- R package for Pathway RespOnsive GENe activity inference☆109Updated 2 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆69Updated 9 months ago
- scWGCNA☆61Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- R package for semi-supervised single-cell data integration☆90Updated 2 months ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆69Updated last month
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆43Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 6 months ago
- ☆46Updated last week
- Methods for decontamination of single cell data☆49Updated 8 months ago
- Functional Inference of Gene Regulation☆48Updated last year
- R Package for Single-Cell Dataset Processing and Visualization☆64Updated 4 years ago
- ☆94Updated last month
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago