MarioniLab / oor_design_reproducibilityLinks
☆16Updated 2 years ago
Alternatives and similar repositories for oor_design_reproducibility
Users that are interested in oor_design_reproducibility are comparing it to the libraries listed below
Sorting:
- ☆12Updated 4 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated last year
- Gene Expression Decomposition and Integration☆19Updated 8 months ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆16Updated last month
- ☆12Updated 3 years ago
- Vaeda method for computational doublet annotation☆17Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- ☆20Updated last month
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11Updated last year
- ☆20Updated 2 years ago
- ☆17Updated last year
- ☆12Updated 6 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- Difference in Intercellular Communication from scRNA-seq data☆22Updated last month
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- Tools for assessing clustering robustness☆28Updated 2 months ago
- ☆17Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 8 months ago
- ☆18Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 2 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- ☆12Updated last year
- A record of the analysis pipelines used to create the HTAPP data☆33Updated 7 months ago
- Landscape Single Cell Entropy☆21Updated 5 years ago
- python API to the CoGAPS NMF package☆19Updated 5 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- ☆25Updated 3 years ago
- Pairwise Hierarchical Model☆20Updated 3 years ago