MarioniLab / oor_design_reproducibility
☆15Updated last year
Alternatives and similar repositories for oor_design_reproducibility:
Users that are interested in oor_design_reproducibility are comparing it to the libraries listed below
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 6 months ago
- ☆12Updated 4 years ago
- Code, data and analysis for moslin.☆12Updated 6 months ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆12Updated last year
- Gene Expression Decomposition and Integration☆17Updated 2 months ago
- Vaeda method for computational doublet annotation☆16Updated 10 months ago
- R and MATLAB scripts for MAGICAL☆11Updated 10 months ago
- ☆20Updated last year
- ☆12Updated 2 years ago
- scVI extension for unspliced RNA☆16Updated 3 months ago
- ☆17Updated last month
- ANS_signature_scoring: A gene expression signature scoring Python package.☆15Updated 3 weeks ago
- ☆17Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated last month
- Information-based dimensionality reduction☆29Updated 4 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆19Updated 3 months ago
- ☆12Updated last month
- ☆17Updated 7 months ago
- python API to the CoGAPS NMF package☆19Updated last year
- scover☆23Updated last year
- ☆20Updated last year
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆9Updated 2 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 6 months ago
- cross-species analysis of cell identities, markers and regulations☆12Updated last month
- ☆11Updated last year
- COMUNET: a tool to explore and visualize intercellular communication☆12Updated 5 years ago
- Landscape Single Cell Entropy☆19Updated 4 years ago
- Reproducibility notebooks for scPoli☆16Updated 2 years ago