Segmentation error aware clustering for multiplexed imaging
☆19Jan 9, 2025Updated last year
Alternatives and similar repositories for starling
Users that are interested in starling are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Jun 25, 2025Updated 10 months ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆31Apr 30, 2026Updated last week
- Interactive TooManyCells Trees☆14Dec 6, 2024Updated last year
- ☆37Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated last year
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13May 1, 2026Updated last week
- ☆21Apr 27, 2025Updated last year
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆19Sep 19, 2025Updated 7 months ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Sep 30, 2022Updated 3 years ago
- Python package for reading imaging mass cytometry (IMC) files☆18Apr 27, 2026Updated last week
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- Build contrasts for models defined with formulaic☆12Apr 27, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆19Oct 28, 2024Updated last year
- ☆27Oct 12, 2024Updated last year
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]☆12Nov 7, 2017Updated 8 years ago
- ☆27Jul 2, 2024Updated last year
- Optimal gating strategies for flow and mass cytometry.☆16Nov 5, 2025Updated 6 months ago
- OME model (specification, code generator, implementation)☆16Jan 22, 2026Updated 3 months ago
- A toolkit for processing multiplexed tissue images☆69Apr 27, 2026Updated last week
- ☆29Updated this week
- ☆12Feb 7, 2017Updated 9 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆37Dec 13, 2023Updated 2 years ago
- AESTETIK: Convolutional autoencoder for learning spot representations from spatial transcriptomics and morphology data☆23Apr 20, 2026Updated 2 weeks ago
- ☆38Jul 26, 2016Updated 9 years ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Jun 13, 2025Updated 10 months ago
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆105Apr 19, 2026Updated 2 weeks ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆39May 7, 2024Updated 2 years ago
- Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifyin…☆21Dec 27, 2023Updated 2 years ago
- ☆71Jan 18, 2023Updated 3 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆66Mar 14, 2024Updated 2 years ago
- Cytofin-an R package for CyTOF data integration☆12Jan 13, 2022Updated 4 years ago
- ☆73May 28, 2025Updated 11 months ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 2 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆173Updated this week
- reorganize paper of deconvolution method☆11Dec 14, 2023Updated 2 years ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆24Sep 29, 2025Updated 7 months ago