Segmentation error aware clustering for multiplexed imaging
☆19Jan 9, 2025Updated last year
Alternatives and similar repositories for starling
Users that are interested in starling are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Jun 23, 2026Updated last month
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆35Jul 27, 2026Updated 3 weeks ago
- Interactive TooManyCells Trees☆14Jun 23, 2026Updated last month
- ☆36Jun 15, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated 2 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Jul 1, 2026Updated last month
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆19Sep 19, 2025Updated 10 months ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Sep 30, 2022Updated 3 years ago
- ☆20Oct 28, 2024Updated last year
- Build contrasts for models defined with formulaic☆13Aug 10, 2026Updated last week
- ☆21Apr 27, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆27Oct 12, 2024Updated last year
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]☆12Nov 7, 2017Updated 8 years ago
- ☆235Jul 30, 2026Updated 2 weeks ago
- Optimal gating strategies for flow and mass cytometry.☆16Jul 22, 2026Updated 3 weeks ago
- A toolkit for processing multiplexed tissue images☆69Aug 10, 2026Updated last week
- ☆12Feb 7, 2017Updated 9 years ago
- OME model (specification, code generator, implementation)☆17Aug 7, 2026Updated last week
- Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifyin…☆21Dec 27, 2023Updated 2 years ago
- ☆38Dec 13, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python package for reading imaging mass cytometry (IMC) files☆20Aug 10, 2026Updated last week
- ☆38Jul 26, 2016Updated 10 years ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Jun 13, 2025Updated last year
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆16Updated this week
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆29Apr 6, 2026Updated 4 months ago
- ☆72Jan 18, 2023Updated 3 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆68Mar 14, 2024Updated 2 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆41May 7, 2024Updated 2 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆22May 27, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The omnibenchmark CLI☆18Updated this week
- Cytofin-an R package for CyTOF data integration☆12Jan 13, 2022Updated 4 years ago
- ☆74May 28, 2025Updated last year
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- reorganize paper of deconvolution method☆11Dec 14, 2023Updated 2 years ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆23Sep 29, 2025Updated 10 months ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 5 months ago