Segmentation error aware clustering for multiplexed imaging
β19Jan 9, 2025Updated last year
Alternatives and similar repositories for starling
Users that are interested in starling are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics π₯π¬β¨β57Sep 2, 2026Updated last month
- Minimum Information about Tissue Imagingβ21Oct 18, 2023Updated 2 years ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.β36Oct 8, 2026Updated last week
- Interactive TooManyCells Treesβ14Jun 23, 2026Updated 3 months ago
- β37Jun 15, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifyinβ¦β21Dec 27, 2023Updated 2 years ago
- Interoperability between SpatialData and the Xenium Explorerβ27Jul 31, 2024Updated 2 years ago
- Python code for cross-condition label refinement in single-cell data with HiDDENβ14Sep 21, 2024Updated 2 years ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editingβ13Jul 1, 2026Updated 3 months ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.β19Sep 19, 2025Updated last year
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial informationβ24Sep 30, 2022Updated 4 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.β12Dec 13, 2024Updated last year
- β20Oct 28, 2024Updated last year
- Build contrasts for models defined with formulaicβ13Updated this week
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- β21Apr 27, 2025Updated last year
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]β12Nov 7, 2017Updated 8 years ago
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniquesβ16Jun 1, 2021Updated 5 years ago
- InstanSeg is a pytorch-based cell and nucleus segmentation pipeline for fluorescence and brightfield microscopy images.β247Sep 29, 2026Updated 2 weeks ago
- β28Oct 12, 2024Updated 2 years ago
- A toolkit for processing multiplexed tissue imagesβ68Updated this week
- Fast, Accurate, Lightweight Python library to make State of the Art Embeddingβ20Jan 25, 2026Updated 8 months ago
- Optimal gating strategies for flow and mass cytometry.β16Jul 22, 2026Updated 2 months ago
- An R package for performing cell typing in SMI and other single cell dataβ56May 1, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- OME model (specification, code generator, implementation)β18Aug 7, 2026Updated 2 months ago
- β38Dec 13, 2023Updated 2 years ago
- Python package for reading imaging mass cytometry (IMC) filesβ20Updated this week
- ClusterMap for multi-scale clustering analysis of spatial gene expressionβ46Jun 13, 2025Updated last year
- β38Jul 26, 2016Updated 10 years ago
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.β17Updated this week
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.β29Aug 21, 2026Updated last month
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communicationsβ67Mar 14, 2024Updated 2 years ago
- β73Jan 18, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information β¦β41May 7, 2024Updated 2 years ago
- The omnibenchmark CLIβ18Updated this week
- Cytofin-an R package for CyTOF data integrationβ12Jan 13, 2022Updated 4 years ago
- β74May 28, 2025Updated last year
- reorganize paper of deconvolution methodβ11Dec 14, 2023Updated 2 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq dataβ23May 27, 2026Updated 4 months ago
- Base implementation of the Multi-Encoder Variational AutoEncoder (ME-VAE)β10Feb 28, 2022Updated 4 years ago