camlab-bioml / starling
Segmentation error aware clustering for multiplexed imaging
☆15Updated 2 months ago
Alternatives and similar repositories for starling:
Users that are interested in starling are comparing it to the libraries listed below
- Interoperability between SpatialData and the Xenium Explorer☆19Updated 7 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆14Updated 3 years ago
- ☆27Updated 5 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆17Updated last week
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆33Updated 10 months ago
- ☆25Updated 5 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆26Updated 6 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆23Updated last week
- Probabilistic cell segmentation for in situ spatial transcriptomics☆66Updated this week
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆57Updated this week
- Spatial Single-Cell Analysis Toolkit☆86Updated last month
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆48Updated last week
- https://sparrow-pipeline.readthedocs.io/en/latest/☆26Updated 2 weeks ago
- ☆52Updated 2 weeks ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 9 months ago
- Image Mass Cytometry analysis pipeline☆25Updated last month
- Slides and Notebooks for scverse 2024☆17Updated 5 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆35Updated 3 months ago
- ☆17Updated 3 weeks ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated 2 years ago
- R package for visualization of highly multiplexed imaging data☆32Updated 8 months ago
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆18Updated last year
- ☆29Updated 10 months ago
- Tools to handle IMC data☆23Updated 2 years ago
- ☆31Updated 2 months ago
- ☆33Updated this week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆35Updated last year
- ☆34Updated 11 months ago