camlab-bioml / starlingLinks
Segmentation error aware clustering for multiplexed imaging
☆18Updated 4 months ago
Alternatives and similar repositories for starling
Users that are interested in starling are comparing it to the libraries listed below
Sorting:
- Interoperability between SpatialData and the Xenium Explorer☆23Updated 10 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆28Updated this week
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆14Updated 3 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 8 months ago
- ☆27Updated 7 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆35Updated last year
- https://sparrow-pipeline.readthedocs.io/en/latest/☆27Updated this week
- ☆28Updated 7 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆37Updated 6 months ago
- ☆35Updated last year
- Identification of spatial homogeneous regions☆21Updated 4 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 11 months ago
- Python package for reading imaging mass cytometry (IMC) files☆15Updated this week
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆62Updated 2 weeks ago
- ☆19Updated 2 weeks ago
- ☆35Updated 2 weeks ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆18Updated last month
- CAST package☆38Updated 7 months ago
- Spatial One☆28Updated 7 months ago
- An R package for performing cell typing in SMI and other single cell data☆37Updated last week
- An R package for handling and analysing imaging mass cytometry data☆26Updated this week
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 2 months ago
- Spatial Single-Cell Analysis Toolkit☆91Updated 2 weeks ago
- Image Mass Cytometry analysis pipeline☆25Updated last month
- Tools to handle IMC data☆23Updated 3 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆11Updated last month
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated 10 months ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆20Updated this week
- ☆48Updated last week