camlab-bioml / starlingLinks
Segmentation error aware clustering for multiplexed imaging
☆19Updated 9 months ago
Alternatives and similar repositories for starling
Users that are interested in starling are comparing it to the libraries listed below
Sorting:
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆16Updated 4 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆37Updated last year
- ☆27Updated last year
- ☆27Updated last week
- Single-cell spatial proteomics analysis that makes you happy!☆41Updated last week
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆16Updated last month
- Spatial Single-Cell Analysis Toolkit☆99Updated 3 months ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆21Updated 6 months ago
- ☆29Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated 3 months ago
- ☆22Updated this week
- ☆39Updated last year
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆33Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆39Updated 7 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆44Updated 3 weeks ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆38Updated last month
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 4 months ago
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆27Updated last year
- ☆73Updated last week
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆24Updated this week
- ☆35Updated last month
- https://sparrow-pipeline.readthedocs.io/en/latest/☆31Updated this week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆89Updated last year
- Test genes for Spatial Variation☆15Updated 10 months ago
- ☆29Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆65Updated 3 months ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆31Updated 3 months ago
- ☆38Updated 2 months ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 4 months ago