Segmentation error aware clustering for multiplexed imaging
☆19Jan 9, 2025Updated last year
Alternatives and similar repositories for starling
Users that are interested in starling are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Quantification module for mcmicro☆11Apr 1, 2025Updated last year
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆11Dec 13, 2022Updated 3 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆60Sep 2, 2026Updated 2 months ago
- Interactive design and validation of antibody panels using single-cell atlases | https://cytomarker.ai☆17Oct 8, 2026Updated 3 weeks ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆58Oct 12, 2026Updated 3 weeks ago
- Interactive TooManyCells Trees☆14Jun 23, 2026Updated 4 months ago
- InstanSeg is a pytorch-based cell and nucleus segmentation pipeline for fluorescence and brightfield microscopy images.☆252Sep 29, 2026Updated last month
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆36Oct 27, 2026Updated last week
- ☆45Jun 3, 2026Updated 5 months ago
- SPatial Omics Oxford Analysis Pipeline☆12Jul 26, 2024Updated 2 years ago
- ☆37Jun 15, 2026Updated 4 months ago
- Spatial One☆32Oct 31, 2024Updated 2 years ago
- ☆13Nov 19, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆19Apr 5, 2024Updated 2 years ago
- Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifyin…☆21Dec 27, 2023Updated 2 years ago
- Mixed-effect model to test differences in cell type proportions from single-cell data, in Python☆10Aug 6, 2026Updated 3 months ago
- ☆12Dec 4, 2023Updated 2 years ago
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆15Jan 28, 2025Updated last year
- Sequential lm for methylation data☆10Jan 11, 2019Updated 7 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆41May 7, 2024Updated 2 years ago
- Interoperability between SpatialData and the Xenium Explorer☆27Jul 31, 2024Updated 2 years ago
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Spatial RNA velocity☆11Oct 3, 2024Updated 2 years ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Jul 1, 2026Updated 4 months ago
- Analyzing cellular niches in spatial transcriptomics data☆39Nov 18, 2024Updated last year
- ☆17Jul 12, 2024Updated 2 years ago
- ☆74May 28, 2025Updated last year
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Aug 24, 2026Updated 2 months ago
- Single cell omics biology annotations☆63Sep 2, 2026Updated 2 months ago
- MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics☆18Dec 7, 2025Updated 10 months ago
- BANKSY: spatial clustering☆172Oct 28, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ANS_signature_scoring: A gene expression signature scoring Python package.☆20Jan 18, 2026Updated 9 months ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated 2 years ago
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆17Mar 3, 2026Updated 8 months ago
- ☆13May 24, 2026Updated 5 months ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆12Dec 13, 2024Updated last year
- ☆20Oct 28, 2024Updated 2 years ago
- Implementation of Christofides Algorithm in Python for TSP☆17Apr 18, 2024Updated 2 years ago