Segmentation error aware clustering for multiplexed imaging
β19Jan 9, 2025Updated last year
Alternatives and similar repositories for starling
Users that are interested in starling are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics π₯π¬β¨β56Updated this week
- Minimum Information about Tissue Imagingβ21Oct 18, 2023Updated 2 years ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.β36Updated this week
- Interactive TooManyCells Treesβ14Jun 23, 2026Updated 2 months ago
- β37Jun 15, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python code for cross-condition label refinement in single-cell data with HiDDENβ14Sep 21, 2024Updated last year
- Interoperability between SpatialData and the Xenium Explorerβ26Jul 31, 2024Updated 2 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.β12Dec 13, 2024Updated last year
- Efficient graph data structures and algorithms for fast slicing, visualization, and editingβ13Jul 1, 2026Updated 2 months ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.β19Sep 19, 2025Updated 11 months ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial informationβ23Sep 30, 2022Updated 3 years ago
- β20Oct 28, 2024Updated last year
- Build contrasts for models defined with formulaicβ13Aug 31, 2026Updated last week
- β21Apr 27, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI β’ AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- β27Oct 12, 2024Updated last year
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]β12Nov 7, 2017Updated 8 years ago
- β240Jul 30, 2026Updated last month
- Optimal gating strategies for flow and mass cytometry.β16Jul 22, 2026Updated last month
- A toolkit for processing multiplexed tissue imagesβ68Aug 31, 2026Updated last week
- Fast, Accurate, Lightweight Python library to make State of the Art Embeddingβ20Jan 25, 2026Updated 7 months ago
- β12Feb 7, 2017Updated 9 years ago
- OME model (specification, code generator, implementation)β17Aug 7, 2026Updated last month
- Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifyinβ¦β21Dec 27, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting β’ AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- β38Dec 13, 2023Updated 2 years ago
- Python package for reading imaging mass cytometry (IMC) filesβ20Aug 31, 2026Updated last week
- β38Jul 26, 2016Updated 10 years ago
- ClusterMap for multi-scale clustering analysis of spatial gene expressionβ46Jun 13, 2025Updated last year
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.β16Aug 31, 2026Updated last week
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.β29Aug 21, 2026Updated 2 weeks ago
- β73Jan 18, 2023Updated 3 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communicationsβ67Mar 14, 2024Updated 2 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information β¦β40May 7, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Flexible, probablistic metrics for quality control of scRNA-seq dataβ23May 27, 2026Updated 3 months ago
- The omnibenchmark CLIβ18Updated this week
- Cytofin-an R package for CyTOF data integrationβ12Jan 13, 2022Updated 4 years ago
- β74May 28, 2025Updated last year
- A writer and reader for NGFF OME-Zarr datasetsβ14Nov 2, 2021Updated 4 years ago
- reorganize paper of deconvolution methodβ11Dec 14, 2023Updated 2 years ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).β24Sep 29, 2025Updated 11 months ago