Segmentation error aware clustering for multiplexed imaging
☆19Jan 9, 2025Updated last year
Alternatives and similar repositories for starling
Users that are interested in starling are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Jun 25, 2025Updated 9 months ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆31Feb 28, 2026Updated last month
- Interactive TooManyCells Trees☆14Dec 6, 2024Updated last year
- ☆37Mar 16, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Interoperability between SpatialData and the Xenium Explorer☆25Jul 31, 2024Updated last year
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Dec 1, 2025Updated 3 months ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆17Sep 19, 2025Updated 6 months ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Sep 30, 2022Updated 3 years ago
- Python package for reading imaging mass cytometry (IMC) files☆18Updated this week
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- Build contrasts for models defined with formulaic☆12Updated this week
- ☆19Oct 28, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆27Oct 12, 2024Updated last year
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]☆12Nov 7, 2017Updated 8 years ago
- Optimal gating strategies for flow and mass cytometry.☆16Nov 5, 2025Updated 4 months ago
- ☆27Jul 2, 2024Updated last year
- OME model (specification, code generator, implementation)☆16Jan 22, 2026Updated 2 months ago
- A toolkit for processing multiplexed tissue images☆67Updated this week
- AESTETIK: Convolutional autoencoder for learning spot representations from spatial transcriptomics and morphology data☆20Mar 9, 2026Updated 3 weeks ago
- ☆28Updated this week
- ☆12Feb 7, 2017Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆37Dec 13, 2023Updated 2 years ago
- ☆38Jul 26, 2016Updated 9 years ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Jun 13, 2025Updated 9 months ago
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆103Updated this week
- Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifyin…☆20Dec 27, 2023Updated 2 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆39May 7, 2024Updated last year
- ☆71Jan 18, 2023Updated 3 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- HFT market making client for openbook-dex☆20Jun 30, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆65Mar 14, 2024Updated 2 years ago
- Cytofin-an R package for CyTOF data integration☆12Jan 13, 2022Updated 4 years ago
- ☆72May 28, 2025Updated 10 months ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆15Feb 27, 2026Updated last month
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆163Mar 16, 2026Updated last week
- reorganize paper of deconvolution method☆11Dec 14, 2023Updated 2 years ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆24Sep 29, 2025Updated 6 months ago