Python implementation of the Slingshot pseudotime algorithm
☆77Oct 28, 2025Updated 9 months ago
Alternatives and similar repositories for pyslingshot
Users that are interested in pyslingshot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆344Apr 23, 2024Updated 2 years ago
- trajectory inference☆109Jan 27, 2025Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆85Feb 17, 2025Updated last year
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆281Apr 26, 2026Updated 3 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Jun 29, 2026Updated last month
- TRAjectory-based Differential Expression analysis for SEQuencing data☆310Jun 17, 2025Updated last year
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34May 19, 2026Updated 2 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆442May 11, 2026Updated 3 months ago
- Python package to perform normalization and variance-stabilization of single-cell data☆28Jul 17, 2025Updated last year
- Convert between AnnData and SingleCellExperiment☆152Updated this week
- CellRank: dynamics from multi-view single-cell data☆455Aug 3, 2026Updated last week
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆195Mar 27, 2025Updated last year
- ☆157Mar 20, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 5 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆129Aug 3, 2026Updated last week
- Finding gene expression states in scRNA-seq data☆54Mar 22, 2024Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆90Jul 28, 2026Updated 2 weeks ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆71Jul 9, 2026Updated last month
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)☆403May 15, 2026Updated 3 months ago
- Vaeda method for computational doublet annotation☆20Feb 1, 2026Updated 6 months ago
- R and MATLAB scripts for MAGICAL☆12Jun 26, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 4 years ago
- ☆17Jan 6, 2025Updated last year
- BEELINE: evaluation of algorithms for gene regulatory network inference☆215Jul 11, 2026Updated last month
- Single-cell epigenomics analysis tools☆324Aug 4, 2026Updated last week
- Clonotype Neighbor Graph Analysis☆100Jun 15, 2026Updated last month
- scDIOR: Single cell data IO softwaRe☆156Feb 15, 2022Updated 4 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆127Updated this week
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆262Jan 16, 2026Updated 6 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆57Jun 2, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆19May 30, 2022Updated 4 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆20Jan 18, 2026Updated 6 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆479Jun 6, 2025Updated last year
- Benchmarking analysis of data integration tools☆426Apr 27, 2026Updated 3 months ago
- Selecting the optimal trajectory inference based on a given dataset and user input 🔮☆19Jun 29, 2020Updated 6 years ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆28Nov 12, 2024Updated last year
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆15Nov 9, 2023Updated 2 years ago