Teichlab / celltypistLinks
A tool for semi-automatic cell type classification
☆398Updated 3 weeks ago
Alternatives and similar repositories for celltypist
Users that are interested in celltypist are comparing it to the libraries listed below
Sorting:
- This is the alpha version of the CellOracle package☆375Updated 7 months ago
- Scanpy Tutorials.☆219Updated last week
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆363Updated this week
- A package to help convert different single-cell data formats to each other☆435Updated last year
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆373Updated 2 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆419Updated 2 months ago
- Single-cell epigenomics analysis tools☆283Updated 2 weeks ago
- Benchmarking analysis of data integration tools☆373Updated 7 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆391Updated last month
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆353Updated 3 weeks ago
- Reference mapping for single-cell genomics☆381Updated last month
- ☆356Updated 3 years ago
- A toolkit of spatial transcriptomic analysis.☆257Updated 2 months ago
- ☆274Updated 9 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆233Updated 7 months ago
- RNA Velocity generalized through dynamical modeling☆458Updated 6 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆227Updated last month
- Panoramic stitching of single cell data☆287Updated last month
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆531Updated 2 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆213Updated 2 months ago
- NicheNet: predict active ligand-target links between interacting cells☆559Updated last month
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆292Updated last month
- CellRank: dynamics from multi-view single-cell data☆393Updated 4 months ago
- TCR and BCR assembly from RNA-seq data☆323Updated 2 weeks ago
- T/B cell receptor sequencing analysis notes☆263Updated 8 months ago
- tools and notes for spatial omics☆313Updated 6 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆448Updated last month
- Differential expression analysis for single-cell RNA-seq data.☆202Updated 6 months ago
- scripts and notebooks from sanbomics☆435Updated 9 months ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆210Updated last year