Teichlab / celltypistLinks
A tool for semi-automatic cell type classification
☆375Updated last month
Alternatives and similar repositories for celltypist
Users that are interested in celltypist are comparing it to the libraries listed below
Sorting:
- Scanpy Tutorials.☆215Updated this week
- A package to help convert different single-cell data formats to each other☆428Updated last year
- Single-cell epigenomics analysis tools☆263Updated 3 weeks ago
- This is the alpha version of the CellOracle package☆361Updated 5 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆399Updated 2 weeks ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆375Updated last month
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆420Updated 2 months ago
- Reference mapping for single-cell genomics☆370Updated last month
- Benchmarking analysis of data integration tools☆363Updated 5 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆227Updated 5 months ago
- Interpretation of cell states using reference single-cell maps☆278Updated last month
- Analysis Pipeline for Single Cell ATAC-seq☆318Updated 2 years ago
- ☆355Updated 3 years ago
- ☆268Updated 7 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆332Updated 11 months ago
- TCR and BCR assembly from RNA-seq data☆311Updated last week
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆298Updated 4 years ago
- A toolkit for single-cell immune profiling☆336Updated this week
- NicheNet: predict active ligand-target links between interacting cells☆548Updated 2 weeks ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆203Updated last year
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆227Updated 2 years ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆362Updated 2 months ago
- tools and notes for spatial omics☆302Updated 3 months ago
- A toolkit of spatial transcriptomic analysis.☆252Updated this week
- A tool for detecting somatic variants in single cell data☆206Updated 9 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆288Updated this week
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆343Updated 3 months ago
- Single cell RNA sequencing analysis course☆215Updated 2 months ago
- R package for integrating and analyzing multiple single-cell datasets☆416Updated last month
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆279Updated 2 years ago