Teichlab / celltypist
A tool for semi-automatic cell type classification
☆327Updated last month
Alternatives and similar repositories for celltypist:
Users that are interested in celltypist are comparing it to the libraries listed below
- Scanpy Tutorials.☆194Updated this week
- A package to help convert different single-cell data formats to each other☆398Updated 10 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆305Updated 6 months ago
- Single-cell epigenomics analysis tools☆244Updated 3 weeks ago
- This is the alpha version of the CellOracle package☆326Updated last week
- Benchmarking analysis of data integration tools☆323Updated this week
- A tool for detecting somatic variants in single cell data☆182Updated 4 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆194Updated this week
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆192Updated 9 months ago
- ☆249Updated 2 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆329Updated 7 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆221Updated last year
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆353Updated last week
- Analysis Pipeline for Single Cell ATAC-seq☆309Updated last year
- TCR and BCR assembly from RNA-seq data☆290Updated 2 weeks ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆263Updated 2 years ago
- LIANA+: an all-in-one framework for cell-cell communication☆177Updated this week
- Interpretation of cell states using reference single-cell maps☆260Updated last month
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆294Updated 4 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆257Updated 3 months ago
- Tutorial for scRNA-seq data analysis beginners using R☆171Updated 9 months ago
- Single cell RNA sequencing analysis course☆200Updated 3 months ago
- A toolkit of spatial transcriptomic analysis.☆214Updated this week
- Differential expression analysis for single-cell RNA-seq data.☆195Updated last year
- T/B cell receptor sequencing analysis notes☆216Updated last month
- Reference mapping for single-cell genomics☆347Updated last week
- ☆349Updated 3 years ago
- Cell types enrichment analysis☆191Updated 7 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆279Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆504Updated 4 months ago