Teichlab / celltypist
A tool for semi-automatic cell type classification
☆340Updated 2 months ago
Alternatives and similar repositories for celltypist:
Users that are interested in celltypist are comparing it to the libraries listed below
- Scanpy Tutorials.☆205Updated last week
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆342Updated 9 months ago
- Single-cell epigenomics analysis tools☆248Updated 2 months ago
- A package to help convert different single-cell data formats to each other☆409Updated last year
- This is the alpha version of the CellOracle package☆338Updated 2 months ago
- ☆353Updated 3 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆205Updated last month
- Benchmarking analysis of data integration tools☆336Updated last month
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆309Updated 7 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆313Updated last year
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆197Updated 11 months ago
- A tool for detecting somatic variants in single cell data☆192Updated 5 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆365Updated 2 months ago
- A toolkit of spatial transcriptomic analysis.☆223Updated this week
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆225Updated last year
- ☆255Updated 4 months ago
- T/B cell receptor sequencing analysis notes☆240Updated 3 months ago
- TCR and BCR assembly from RNA-seq data☆298Updated 3 weeks ago
- NicheNet: predict active ligand-target links between interacting cells☆515Updated last week
- Interpretation of cell states using reference single-cell maps☆268Updated last week
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆267Updated 5 months ago
- Benchmarking computational single cell ATAC-seq methods☆180Updated 4 years ago
- A toolkit for single-cell immune profiling☆327Updated 3 weeks ago
- Single cell RNA sequencing analysis course☆203Updated this week
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆364Updated 2 months ago
- tools and notes for spatial omics☆269Updated last week
- Reference mapping for single-cell genomics☆354Updated last week
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆313Updated last week
- A scanpy extension to analyse single-cell TCR and BCR data.☆227Updated this week
- Differential expression analysis for single-cell RNA-seq data.☆196Updated last week