loosolab / scanproLinks
A modular tool for proportion analysis in single-cell sequencing data
☆23Updated last month
Alternatives and similar repositories for scanpro
Users that are interested in scanpro are comparing it to the libraries listed below
Sorting:
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 2 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 8 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 10 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 11 months ago
- ☆43Updated 2 weeks ago
- ☆13Updated 2 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- ☆32Updated 8 months ago
- Multi-resolution Variational Inference☆22Updated last week
- Single cell omics biology annotations☆50Updated 6 months ago
- iterative clustering pipeline of big single cell datasets.☆34Updated 2 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆37Updated 5 months ago
- Parse ArchR arrow files to anndata h5ad☆15Updated last year
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆34Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆90Updated 5 months ago
- cell type specific, trait-associated gene regulation☆29Updated 7 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆28Updated 3 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated 2 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Information-based dimensionality reduction☆29Updated 11 months ago
- ☆30Updated 6 months ago
- R package IReNA☆28Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆13Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Gene group activity utility functions for Scanpy☆95Updated 10 months ago
- R and MATLAB scripts for MAGICAL☆11Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated 2 weeks ago