loosolab / scanproLinks
A modular tool for proportion analysis in single-cell sequencing data
☆24Updated 4 months ago
Alternatives and similar repositories for scanpro
Users that are interested in scanpro are comparing it to the libraries listed below
Sorting:
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 11 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Updated 5 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last week
- ☆13Updated 5 months ago
- ☆45Updated last week
- Parse ArchR arrow files to anndata h5ad☆16Updated 2 years ago
- cell type specific, trait-associated gene regulation☆29Updated 10 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆46Updated 5 months ago
- iterative clustering pipeline of big single cell datasets.☆36Updated 5 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆31Updated 3 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated 2 years ago
- Information-based dimensionality reduction☆29Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- Single-cell Mutual Information-based Network Engineering Ranger☆22Updated 5 months ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆33Updated last month
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Single cell omics biology annotations☆53Updated 9 months ago
- ☆36Updated 11 months ago
- .h5mu files interface for Seurat☆32Updated 2 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated 2 weeks ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆98Updated 8 months ago
- Difference in Intercellular Communication from scRNA-seq data☆24Updated 3 months ago
- ☆41Updated 7 months ago
- CAST package☆42Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆81Updated 6 months ago
- ☆63Updated 2 years ago
- ☆24Updated 4 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year