loosolab / scanproLinks
A modular tool for proportion analysis in single-cell sequencing data
☆22Updated last month
Alternatives and similar repositories for scanpro
Users that are interested in scanpro are comparing it to the libraries listed below
Sorting:
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 4 months ago
- ☆13Updated 3 weeks ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆39Updated 2 weeks ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 10 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last month
- ☆39Updated 9 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 7 months ago
- Information-based dimensionality reduction☆29Updated 7 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 6 months ago
- cell type specific, trait-associated gene regulation☆27Updated 3 months ago
- ☆26Updated 4 months ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆28Updated 5 months ago
- Python implementation of Gene Trajectory☆25Updated 10 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Gene group activity utility functions for Scanpy☆79Updated 6 months ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- iterative clustering pipeline of big single cell datasets.☆33Updated 2 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago
- Single cell omics biology annotations☆51Updated 2 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated last month
- ☆17Updated last year
- ☆32Updated 5 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆53Updated 10 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆33Updated last month
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Multi-resolution Variational Inference☆22Updated 3 weeks ago
- Reproducibility notebooks for scPoli☆18Updated 2 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆29Updated 7 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆84Updated last month