A modular tool for proportion analysis in single-cell sequencing data
☆25Feb 26, 2026Updated last month
Alternatives and similar repositories for scanpro
Users that are interested in scanpro are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Jul 12, 2024Updated last year
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆33Nov 4, 2023Updated 2 years ago
- The Singularity Community Catalog of Singularity* recipe files.☆11Oct 27, 2025Updated 5 months ago
- Python playground for cell-type-specific biology☆12Updated this week
- Porting of Protein Activity and Pathway Inference to single cell and Python.☆15Feb 10, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆16Sep 1, 2023Updated 2 years ago
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- Finding gene expression states in scRNA-seq data☆50Mar 22, 2024Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 8 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Oct 7, 2024Updated last year
- ☆49Oct 29, 2025Updated 5 months ago
- a deep generative model for single-cell survival analysis☆20Dec 2, 2025Updated 4 months ago
- NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…☆33Jul 23, 2025Updated 8 months ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Mar 16, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Non-parametric density inference for single-cell analysis.☆73Updated this week
- ☆15Aug 17, 2023Updated 2 years ago
- VirusScan Pipeline☆12Feb 7, 2026Updated 2 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆90Updated this week
- Library for KEGG pathway enrichment analysis☆19Apr 1, 2026Updated last week
- ☆46Jan 26, 2026Updated 2 months ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated 10 months ago
- A tissue-specific single-cell biological age model☆14Jul 26, 2023Updated 2 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆43Updated this week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Build contrasts for models defined with formulaic☆12Updated this week
- ☆12Jan 8, 2026Updated 3 months ago
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆48May 14, 2025Updated 10 months ago
- Slides and Notebooks for scverse 2024☆17Sep 24, 2024Updated last year
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Oct 17, 2024Updated last year
- Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data☆17Mar 18, 2023Updated 3 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆76Nov 11, 2025Updated 5 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- Latent Embedding Multivariate Regression☆101Mar 20, 2026Updated 3 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Python package for Probe set selection for targeted spatial transcriptomics.☆48Nov 8, 2025Updated 5 months ago
- ☆47Jan 28, 2026Updated 2 months ago
- ☆35Updated this week
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- Read RDS files, in Python☆27Updated this week
- scDIOR: Single cell data IO softwaRe☆155Feb 15, 2022Updated 4 years ago
- ☆40Dec 31, 2025Updated 3 months ago