A package to help convert different single-cell data formats to each other
☆471Feb 20, 2026Updated 8 months ago
Alternatives and similar repositories for sceasy
Users that are interested in sceasy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Conversion between scRNA-seq objects☆209May 5, 2026Updated 5 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆574Mar 21, 2025Updated last year
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated 2 months ago
- NicheNet: predict active ligand-target links between interacting cells☆684Oct 23, 2026Updated last week
- CellRank: dynamics from multi-view single-cell data☆460Oct 14, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Methods for detecting doublets in single-cell sequencing data☆276Oct 18, 2026Updated 2 weeks ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆315Jun 30, 2026Updated 4 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆347Nov 1, 2022Updated 4 years ago
- reticulate-free single cell format conversion☆223Jul 10, 2026Updated 3 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆253Aug 7, 2024Updated 2 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆676Oct 15, 2026Updated 2 weeks ago
- High dimensional weighted gene co-expression network analysis☆494Jun 16, 2026Updated 4 months ago
- Convert between AnnData and SingleCellExperiment☆154Updated this week
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆427Sep 12, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Fast Wilcoxon and auROC☆220Sep 20, 2026Updated last month
- Interfaces for HDF5-based Single Cell File Formats☆177Nov 4, 2023Updated 2 years ago
- A tool for semi-automatic cell type classification☆517May 22, 2026Updated 5 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆649Jun 26, 2025Updated last year
- ☆317Nov 10, 2024Updated last year
- Interpretation of cell states using reference single-cell maps☆329Dec 19, 2025Updated 10 months ago
- Inferring CNV from Single-Cell RNA-Seq☆687Updated this week
- Automated, probabilistic assignment of cell types in scRNA-seq data☆216Jan 9, 2023Updated 3 years ago
- Benchmarking analysis of data integration tools☆435Apr 27, 2026Updated 6 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Reference mapping for single-cell genomics☆414Jun 26, 2026Updated 4 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆790Jan 6, 2024Updated 2 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆204Aug 12, 2025Updated last year
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆348Apr 23, 2024Updated 2 years ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆484Apr 11, 2026Updated 6 months ago
- ☆363Dec 9, 2021Updated 4 years ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- ☆314Jun 16, 2026Updated 4 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆319Jun 17, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An interactive explorer for single-cell transcriptomics data☆788Updated this week
- Clone of the Bioconductor repository for the SingleR package.☆205Sep 10, 2026Updated last month
- RNA Velocity generalized through dynamical modeling☆514Feb 25, 2026Updated 8 months ago
- A toolkit for single-cell immune profiling☆377Oct 16, 2026Updated 2 weeks ago
- R package for integrating and analyzing multiple single-cell datasets☆435Aug 18, 2026Updated 2 months ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆216Dec 10, 2025Updated 10 months ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆501Apr 5, 2024Updated 2 years ago