Stitch multiple Visium slides together
☆17Oct 16, 2025Updated 11 months ago
Alternatives and similar repositories for visium_stitcher
Users that are interested in visium_stitcher are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Interactive TooManyCells Trees☆14Jun 23, 2026Updated 2 months ago
- A set of files to do genomics analysis on python☆19Jun 5, 2025Updated last year
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Jun 29, 2026Updated 2 months ago
- ☆12Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pipeline for harmonising immunological receptor–epitope interactions☆17Sep 2, 2026Updated 2 weeks ago
- detecting spatial patterns of allele-specific expression☆11May 22, 2024Updated 2 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆16Aug 17, 2023Updated 3 years ago
- Official imagej plugin of the "SACD" -v1.1.3☆12Feb 8, 2024Updated 2 years ago
- ☆14Feb 21, 2023Updated 3 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆42Nov 18, 2025Updated 10 months ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆19Jun 9, 2025Updated last year
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12May 19, 2021Updated 5 years ago
- codes for article☆18Jan 14, 2026Updated 8 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- CeLEry: cell location recovery in single-cell RNA sequencing☆38Feb 14, 2025Updated last year
- Multimodal Spatial-Omics Reveal Co-Evolution of Alveolar Progenitors and Proinflammatory Niches in Progression of Lung Precursor Lesions☆18Sep 18, 2025Updated last year
- QuPath extension for Cellsparse☆19May 6, 2025Updated last year
- ☆17Feb 18, 2025Updated last year
- Spatial Single Cell transcriptomic library☆22Jan 15, 2026Updated 8 months ago
- An R/Bioconductor package to identify higher-order molecular phenotypes☆19Jan 15, 2024Updated 2 years ago
- Selecting the optimal trajectory inference based on a given dataset and user input 🔮☆19Jun 29, 2020Updated 6 years ago
- scRNA-seq analysis of EENT-ONB☆22Jan 14, 2024Updated 2 years ago
- Join subcellular Visium HD bins into cells☆143Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Identification of spatial homogeneous regions☆21Oct 6, 2025Updated 11 months ago
- Vaeda method for computational doublet annotation☆21Feb 1, 2026Updated 7 months ago
- Extension of SpatialExperiment with sf☆58May 6, 2026Updated 4 months ago
- ☆137Feb 11, 2024Updated 2 years ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆21Mar 14, 2021Updated 5 years ago
- Implementation of multiplex Leiden for analysis of spatial omics data☆22Jul 7, 2026Updated 2 months ago
- ☆28May 22, 2025Updated last year
- ☆54May 18, 2026Updated 4 months ago
- QuPath extension to interactively align images☆29Aug 7, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications☆25Dec 11, 2023Updated 2 years ago
- 基于pyqt和python-vlc开发的播放器demo,可以对阿里云视频直播进行监测☆10Mar 25, 2021Updated 5 years ago
- ☆27Apr 8, 2025Updated last year
- Pipeline for designing custom probes against human genes☆24Jan 30, 2026Updated 7 months ago
- ☆26Nov 5, 2022Updated 3 years ago
- interactive plots for differential expression analysis☆36Apr 30, 2026Updated 4 months ago
- Interoperability between SpatialData and the Xenium Explorer☆27Jul 31, 2024Updated 2 years ago