scverse / scirpyLinks
A scanpy extension to analyse single-cell TCR and BCR data.
☆231Updated last week
Alternatives and similar repositories for scirpy
Users that are interested in scirpy are comparing it to the libraries listed below
Sorting:
- Python package to perform enrichment analysis from omics data.☆196Updated this week
- Episcanpy: Epigenomics Single Cell Analysis in Python☆144Updated 5 months ago
- muon is a multimodal omics Python framework☆236Updated 3 months ago
- Differential expression analysis for single-cell RNA-seq data.☆197Updated 3 months ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆223Updated last month
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆331Updated 10 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆163Updated last year
- A tool for detecting somatic variants in single cell data☆205Updated 8 months ago
- Interpretation of cell states using reference single-cell maps☆276Updated last week
- R package to access DoRothEA's regulons☆148Updated last year
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆227Updated 2 years ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆131Updated 6 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆114Updated last week
- Single-cell epigenomics analysis tools☆260Updated this week
- Benchmarking computational single cell ATAC-seq methods☆183Updated 4 years ago
- Benchmarking analysis of data integration tools☆357Updated 4 months ago
- Detect doublets in single-cell RNA-seq data☆151Updated 4 years ago
- Methods for detecting doublets in single-cell sequencing data☆195Updated 2 months ago
- A tool for semi-automatic cell type classification☆367Updated 3 weeks ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆201Updated last year
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆156Updated last week
- LIANA: a LIgand-receptor ANalysis frAmework☆204Updated 9 months ago
- Panoramic stitching of single cell data☆283Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆160Updated 2 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆279Updated 2 years ago
- T/B cell receptor sequencing analysis notes☆254Updated 6 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆132Updated 2 years ago
- Cell types enrichment analysis☆197Updated last year
- Test genes for Spatial Variation☆170Updated last year
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆224Updated 4 months ago