scverse / scirpy
A scanpy extension to analyse single-cell TCR and BCR data.
☆226Updated last week
Alternatives and similar repositories for scirpy:
Users that are interested in scirpy are comparing it to the libraries listed below
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆306Updated 7 months ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆142Updated 2 months ago
- Python package to perform enrichment analysis from omics data.☆179Updated 2 weeks ago
- muon is a multimodal omics Python framework☆226Updated 3 weeks ago
- Differential expression analysis for single-cell RNA-seq data.☆196Updated last year
- A tool for detecting somatic variants in single cell data☆189Updated 5 months ago
- Benchmarking analysis of data integration tools☆332Updated last month
- T/B cell receptor sequencing analysis notes☆218Updated 2 months ago
- Interpretation of cell states using reference single-cell maps☆263Updated 3 months ago
- Single-cell epigenomics analysis tools☆247Updated last month
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆122Updated 3 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆158Updated last year
- A tool for semi-automatic cell type classification☆334Updated 2 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆264Updated 2 years ago
- LIANA+: an all-in-one framework for cell-cell communication☆184Updated last week
- Reference mapping for single-cell genomics☆349Updated last month
- A toolkit for single-cell immune profiling☆325Updated last week
- Benchmarking computational single cell ATAC-seq methods☆180Updated 4 years ago
- Detect doublets in single-cell RNA-seq data☆140Updated 4 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆193Updated 10 months ago
- Conversion between scRNA-seq objects☆159Updated 2 months ago
- Scaling Single Cell Analysis to Millions of Cells☆179Updated last week
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆112Updated this week
- Panoramic stitching of single cell data☆273Updated 10 months ago
- ☆253Updated 3 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆192Updated 6 months ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆217Updated 2 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆154Updated 7 months ago
- Cell types enrichment analysis☆191Updated 8 months ago
- Test genes for Spatial Variation☆157Updated 9 months ago