scverse / scirpy
A scanpy extension to analyse single-cell TCR and BCR data.
☆230Updated this week
Alternatives and similar repositories for scirpy:
Users that are interested in scirpy are comparing it to the libraries listed below
- Differential expression analysis for single-cell RNA-seq data.☆197Updated last month
- Python package to perform enrichment analysis from omics data.☆190Updated this week
- Episcanpy: Epigenomics Single Cell Analysis in Python☆143Updated 4 months ago
- muon is a multimodal omics Python framework☆231Updated last month
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆219Updated 4 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆320Updated 9 months ago
- A tool for detecting somatic variants in single cell data☆198Updated 7 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆162Updated last year
- T/B cell receptor sequencing analysis notes☆247Updated 4 months ago
- Single-cell epigenomics analysis tools☆255Updated this week
- Interpretation of cell states using reference single-cell maps☆269Updated last week
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆197Updated last year
- Panoramic stitching of single cell data☆277Updated last year
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆226Updated last year
- A toolkit for single-cell immune profiling☆329Updated 3 weeks ago
- Cell types enrichment analysis☆194Updated 10 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆131Updated 5 months ago
- Benchmarking analysis of data integration tools☆344Updated 3 months ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆151Updated this week
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆190Updated 2 years ago
- Scanpy use cases.☆85Updated 4 years ago
- Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data proces…☆189Updated this week
- Detect doublets in single-cell RNA-seq data☆146Updated 4 years ago
- Scanpy Tutorials.☆209Updated this week
- Conversion between scRNA-seq objects☆171Updated last week
- ☆260Updated 5 months ago
- A package to help convert different single-cell data formats to each other☆418Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆112Updated this week
- ☆353Updated 3 years ago
- Scaling Single Cell Analysis to Millions of Cells☆194Updated this week