A scanpy extension to analyse single-cell TCR and BCR data.
☆249Apr 27, 2026Updated this week
Alternatives and similar repositories for scirpy
Users that are interested in scirpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆125Apr 14, 2026Updated 2 weeks ago
- A toolkit for single-cell immune profiling☆367Updated this week
- CellRank: dynamics from multi-view single-cell data☆443Updated this week
- Reference mapping for single-cell genomics☆404Mar 21, 2026Updated last month
- muon is a multimodal omics Python framework☆266Mar 16, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- TCR and BCR assembly from RNA-seq data☆346Apr 23, 2026Updated last week
- Interpretation of cell states using reference single-cell maps☆316Dec 19, 2025Updated 4 months ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆238Feb 12, 2026Updated 2 months ago
- Detect doublets in single-cell RNA-seq data☆172Dec 29, 2020Updated 5 years ago
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆338Nov 18, 2025Updated 5 months ago
- Benchmarking analysis of data integration tools☆413Updated this week
- Single-cell analysis in Python. Scales to >100M cells.☆2,432Updated this week
- Single-cell Lung Cancer Atlas with 1.2M cells☆92Jan 19, 2025Updated last year
- Spatial Single Cell Analysis in Python☆566Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆392Jul 30, 2025Updated 9 months ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆266Apr 21, 2026Updated last week
- A Bayesian model for compositional single-cell data analysis☆196Jan 13, 2026Updated 3 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆428Apr 23, 2026Updated last week
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated 9 months ago
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 4 years ago
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆99Apr 11, 2025Updated last year
- RNA Velocity generalized through dynamical modeling☆497Feb 25, 2026Updated 2 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆17Jun 28, 2025Updated 10 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A package to help convert different single-cell data formats to each other☆465Feb 20, 2026Updated 2 months ago
- Clonotype Neighbor Graph Analysis☆96Feb 12, 2026Updated 2 months ago
- A tool for semi-automatic cell type classification☆473Mar 21, 2026Updated last month
- Using TCR and expression for sequence embedding☆63Jan 6, 2026Updated 3 months ago
- Differential expression analysis for single-cell RNA-seq data.☆206Oct 21, 2025Updated 6 months ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆136Nov 28, 2023Updated 2 years ago
- Annotated data.☆735Updated this week
- Gene Set Enrichment Analysis in Python☆696Updated this week
- Automated cell type classification☆116Jan 3, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Updated this week
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆160Mar 23, 2026Updated last month
- Episcanpy: Epigenomics Single Cell Analysis in Python☆151Dec 5, 2024Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆428Feb 4, 2026Updated 2 months ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,607Apr 24, 2026Updated last week
- software to detect doublets☆98Dec 28, 2024Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆639Nov 12, 2025Updated 5 months ago