jackbibby1 / SCPA
R package for pathway analysis in scRNA-seq data
☆62Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for SCPA
- Coarse-graining of large single-cell RNA-seq data into metacells☆68Updated 2 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆59Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆49Updated 2 months ago
- Methods to discover gene programs on single-cell data☆84Updated this week
- R package for semi-supervised single-cell data integration☆75Updated 9 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆92Updated 5 months ago
- Functions for single cell data analysis☆27Updated 3 years ago
- Pan-Cancer Single Cell Classifier☆61Updated 5 months ago
- Codes used in pan-T cell analysis☆49Updated last year
- ☆58Updated 5 years ago
- ☆39Updated 3 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆61Updated 2 years ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆39Updated this week
- Functional Inference of Gene Regulation☆37Updated 4 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated last month
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆77Updated last year
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 3 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆46Updated last year
- Analysis of cell-cell communication at single-cell resolution☆96Updated 2 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆48Updated 2 weeks ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆66Updated this week
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆54Updated 7 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 3 years ago
- ☆46Updated last month
- Method for de novo mutation calling from droplet based single cell RNA seq data☆12Updated 3 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆56Updated last month
- Single-cell Lung Cancer Atlas with 1.2M cells☆59Updated last year
- Estimation of Single-Cell Potency with Single Cell Entropy☆38Updated last year
- scWGCNA☆55Updated 2 years ago
- ☆53Updated 10 months ago