zktuong / ktplotsLinks
Some tools for plotting single-cell data
☆176Updated 6 months ago
Alternatives and similar repositories for ktplots
Users that are interested in ktplots are comparing it to the libraries listed below
Sorting:
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆212Updated 3 months ago
- Gene set scoring for single-cell data☆171Updated last month
- ☆178Updated 6 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆109Updated last year
- Methods for detecting doublets in single-cell sequencing data☆218Updated last month
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- scDIOR: Single cell data IO softwaRe☆150Updated 3 years ago
- The integration of single cell rank-based gene set enrichment analysis☆140Updated 5 months ago
- Cell type prioritization in single-cell data☆128Updated last year
- AUCell: score single cells with gene regulatory networks☆174Updated last year
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆167Updated 3 months ago
- Quantifying metabolism activity at the single-cell resolution☆147Updated 5 months ago
- reticulate-free single cell format conversion☆198Updated last week
- LIANA: a LIgand-receptor ANalysis frAmework☆224Updated last year
- ☆193Updated 3 weeks ago
- Significance analysis for clustering single-cell RNA-sequencing data☆119Updated last year
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆234Updated 2 years ago
- Clone of the Bioconductor repository for the SingleR package.☆198Updated last month
- Methods to discover gene programs on single-cell data☆163Updated 2 months ago
- Scissor package☆243Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆113Updated 3 months ago
- A Shiny web app for mapping datasets using Seurat v4☆139Updated last year
- Easy single cell analysis platform for enrichment☆199Updated last week
- Assessing the purity of single cell population☆137Updated 3 years ago
- A Bayesian model for compositional single-cell data analysis☆183Updated 2 years ago
- Multiome GRN inference.☆131Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆110Updated 7 months ago
- Fast Wilcoxon and auROC☆198Updated last year