zktuong / ktplotsLinks
Some tools for plotting single-cell data
☆175Updated 4 months ago
Alternatives and similar repositories for ktplots
Users that are interested in ktplots are comparing it to the libraries listed below
Sorting:
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆208Updated last month
- Gene set scoring for single-cell data☆165Updated this week
- Methods for detecting doublets in single-cell sequencing data☆209Updated last month
- R package to visualize gene expression data based on weighted kernel density estimation☆105Updated last year
- AUCell: score single cells with gene regulatory networks☆169Updated last year
- Quantifying metabolism activity at the single-cell resolution☆140Updated 3 months ago
- scDIOR: Single cell data IO softwaRe☆148Updated 3 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆218Updated last year
- The integration of single cell rank-based gene set enrichment analysis☆133Updated 3 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- reticulate-free single cell format conversion☆187Updated last week
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆163Updated last month
- Scissor package☆237Updated last year
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago
- ☆176Updated 4 months ago
- Cell type prioritization in single-cell data☆125Updated 11 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆119Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆112Updated last month
- Assessing the purity of single cell population☆136Updated 3 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆172Updated 6 months ago
- Methods to discover gene programs on single-cell data☆149Updated last week
- ☆173Updated 3 weeks ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆230Updated 2 years ago
- Conversion between scRNA-seq objects☆187Updated last month
- Interpretation of cell states using reference single-cell maps☆293Updated last month
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 11 months ago
- Clone of the Bioconductor repository for the SingleR package.☆195Updated 2 months ago
- Create stacked violin plot☆51Updated 3 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆110Updated 2 years ago