Some tools for plotting single-cell data
☆178May 17, 2025Updated 11 months ago
Alternatives and similar repositories for ktplots
Users that are interested in ktplots are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Apr 27, 2026Updated last week
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆122Apr 26, 2025Updated last year
- High dimensional weighted gene co-expression network analysis☆472Mar 13, 2026Updated last month
- Interpretation of cell states using reference single-cell maps☆317Dec 19, 2025Updated 4 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆295Jun 17, 2025Updated 10 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆470Jun 6, 2025Updated 11 months ago
- Easy single cell analysis platform for enrichment☆223Apr 3, 2026Updated last month
- LIANA: a LIgand-receptor ANalysis frAmework☆239Aug 7, 2024Updated last year
- A tool for semi-automatic cell type classification☆473Updated this week
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆185Aug 12, 2025Updated 8 months ago
- Scissor package☆262May 10, 2024Updated last year
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆328Apr 23, 2024Updated 2 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆324Nov 1, 2022Updated 3 years ago
- Conversion between scRNA-seq objects☆207Apr 16, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 4 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆222Mar 2, 2026Updated 2 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆781Jan 6, 2024Updated 2 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆429Apr 27, 2026Updated last week
- A tool for detecting somatic variants in single cell data☆218Sep 15, 2024Updated last year
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆288Updated this week
- R package for detecting doublets in single-cell RNA sequencing data☆546Mar 21, 2025Updated last year
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆540Apr 6, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for integrating and analyzing multiple single-cell datasets☆429Feb 4, 2026Updated 3 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆297Apr 30, 2026Updated last week
- A package to help convert different single-cell data formats to each other☆465Feb 20, 2026Updated 2 months ago
- A toolkit for single-cell immune profiling☆369Apr 24, 2026Updated last week
- AUCell: score single cells with gene regulatory networks☆191Mar 9, 2024Updated 2 years ago
- R package to infer biological activities from omics data using a collection of methods.☆293Dec 16, 2025Updated 4 months ago
- R package for semi-supervised single-cell data integration☆98Jan 27, 2026Updated 3 months ago
- Metacell - Single-cell mRNA Analysis☆121Mar 16, 2026Updated last month
- ☆362Dec 9, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Methods for detecting doublets in single-cell sequencing data☆247Feb 12, 2026Updated 2 months ago
- Fast Wilcoxon and auROC☆207Nov 8, 2024Updated last year
- Gene set scoring for single-cell data☆194Apr 29, 2026Updated last week
- Spatial Transcriptomics Capture Location Deconvolution☆205Oct 20, 2025Updated 6 months ago
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 4 years ago
- Quantifying metabolism activity at the single-cell resolution☆175Feb 18, 2026Updated 2 months ago
- NicheNet: predict active ligand-target links between interacting cells☆642Nov 12, 2025Updated 5 months ago