Some tools for plotting single-cell data
☆178May 17, 2025Updated last year
Alternatives and similar repositories for ktplots
Users that are interested in ktplots are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Jun 29, 2026Updated last month
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆124Apr 26, 2025Updated last year
- High dimensional weighted gene co-expression network analysis☆491Jun 16, 2026Updated 2 months ago
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 7 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆310Jun 17, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆480Jun 6, 2025Updated last year
- Easy single cell analysis platform for enrichment☆228Aug 9, 2026Updated last week
- LIANA: a LIgand-receptor ANalysis frAmework☆247Aug 7, 2024Updated 2 years ago
- A tool for semi-automatic cell type classification☆500May 22, 2026Updated 2 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆195Aug 12, 2025Updated last year
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆344Apr 23, 2024Updated 2 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆335Nov 1, 2022Updated 3 years ago
- Scissor package☆273May 10, 2024Updated 2 years ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Conversion between scRNA-seq objects☆209May 5, 2026Updated 3 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆244Mar 2, 2026Updated 5 months ago
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆793Jan 6, 2024Updated 2 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆311Jun 30, 2026Updated last month
- R package implementation of Milo for testing for differential abundance in KNN graphs☆443May 11, 2026Updated 3 months ago
- A tool for detecting somatic variants in single cell data☆228Sep 15, 2024Updated last year
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆548Aug 3, 2026Updated 2 weeks ago
- R package for detecting doublets in single-cell RNA sequencing data☆557Mar 21, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆293Jul 23, 2026Updated 3 weeks ago
- R package for integrating and analyzing multiple single-cell datasets☆432Feb 4, 2026Updated 6 months ago
- A toolkit for single-cell immune profiling☆374Updated this week
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 5 months ago
- AUCell: score single cells with gene regulatory networks☆201Mar 9, 2024Updated 2 years ago
- R package to infer biological activities from omics data using a collection of methods.☆304Dec 16, 2025Updated 8 months ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆43Dec 1, 2025Updated 8 months ago
- Methods for detecting doublets in single-cell sequencing data☆260Jul 7, 2026Updated last month
- Metacell - Single-cell mRNA Analysis☆123Aug 10, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast Wilcoxon and auROC☆216May 5, 2026Updated 3 months ago
- ☆363Dec 9, 2021Updated 4 years ago
- Spatial Transcriptomics Capture Location Deconvolution☆211Oct 20, 2025Updated 9 months ago
- R package for semi-supervised single-cell data integration☆101Jan 27, 2026Updated 6 months ago
- Gene set scoring for single-cell data☆205Apr 29, 2026Updated 3 months ago
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 5 years ago
- NicheNet: predict active ligand-target links between interacting cells☆673Jun 1, 2026Updated 2 months ago