Gene set scoring for single-cell data
☆192Feb 11, 2026Updated 2 months ago
Alternatives and similar repositories for UCell
Users that are interested in UCell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A database of useful gene signatures for single-cell analysis☆28May 19, 2025Updated 11 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆141Mar 13, 2026Updated last month
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆297Updated this week
- R package implementation of Milo for testing for differential abundance in KNN graphs☆428Apr 23, 2026Updated last week
- A tool for semi-automatic cell type classification☆473Mar 21, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Easy single cell analysis platform for enrichment☆223Apr 3, 2026Updated 3 weeks ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆470Jun 6, 2025Updated 10 months ago
- Gene set variation analysis☆240Updated this week
- Methods to discover gene programs on single-cell data☆180Apr 1, 2026Updated last month
- AUCell: score single cells with gene regulatory networks☆191Mar 9, 2024Updated 2 years ago
- R package for semi-supervised single-cell data integration☆98Jan 27, 2026Updated 3 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆239Aug 7, 2024Updated last year
- High dimensional weighted gene co-expression network analysis☆472Mar 13, 2026Updated last month
- R package for detecting doublets in single-cell RNA sequencing data☆545Mar 21, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Updated this week
- A package to help convert different single-cell data formats to each other☆465Feb 20, 2026Updated 2 months ago
- CellRank: dynamics from multi-view single-cell data☆443Apr 24, 2026Updated last week
- Methods for detecting doublets in single-cell sequencing data☆246Feb 12, 2026Updated 2 months ago
- NicheNet: predict active ligand-target links between interacting cells☆639Nov 12, 2025Updated 5 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆778Jan 6, 2024Updated 2 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆587Mar 4, 2026Updated last month
- The integration of single cell rank-based gene set enrichment analysis☆152Jan 14, 2026Updated 3 months ago
- Quantifying metabolism activity at the single-cell resolution☆173Feb 18, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast Wilcoxon and auROC☆207Nov 8, 2024Updated last year
- Interpretation of cell states using reference single-cell maps☆316Dec 19, 2025Updated 4 months ago
- Multiome GRN inference.☆135Apr 10, 2026Updated 3 weeks ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆187Mar 27, 2025Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆428Feb 4, 2026Updated 2 months ago
- Some tools for plotting single-cell data☆178May 17, 2025Updated 11 months ago
- ☆294Nov 10, 2024Updated last year
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆392Jul 30, 2025Updated 9 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆643Apr 21, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆642Mar 11, 2026Updated last month
- R package to visualize gene expression data based on weighted kernel density estimation☆112Feb 6, 2026Updated 2 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆154Aug 3, 2025Updated 8 months ago
- ☆183May 6, 2025Updated 11 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆49Apr 21, 2025Updated last year
- Multi-sample multi-group scRNA-seq analysis tools☆227Updated this week
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆323Nov 1, 2022Updated 3 years ago