ventolab / CellphoneDB
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
☆362Updated last month
Alternatives and similar repositories for CellphoneDB:
Users that are interested in CellphoneDB are comparing it to the libraries listed below
- ☆353Updated 3 years ago
- A tool for semi-automatic cell type classification☆333Updated last month
- A package to help convert different single-cell data formats to each other☆405Updated 11 months ago
- NicheNet: predict active ligand-target links between interacting cells☆513Updated 5 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆346Updated 2 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆306Updated 6 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆439Updated last week
- This is the alpha version of the CellOracle package☆331Updated last month
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆335Updated 8 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆222Updated last year
- ☆363Updated last month
- A toolkit for single-cell immune profiling☆325Updated this week
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆438Updated 8 months ago
- Interpretation of cell states using reference single-cell maps☆263Updated 2 months ago
- Analysis of single cell RNA-seq data course☆129Updated 2 years ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆302Updated 5 months ago
- Scanpy Tutorials.☆198Updated this week
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆282Updated 4 years ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆470Updated 10 months ago
- Benchmarking analysis of data integration tools☆331Updated last month
- ☆253Updated 3 months ago
- Community-provided extensions to Seurat☆320Updated 2 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆201Updated 3 weeks ago
- ☆221Updated 7 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆279Updated last year
- Single cell RNA sequencing analysis course☆202Updated 4 months ago
- R package for integrating and analyzing multiple single-cell datasets☆402Updated last month
- High dimensional weighted gene co-expression network analysis☆375Updated 2 weeks ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆398Updated last week
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆264Updated 2 years ago