ventolab / CellphoneDBLinks
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
☆409Updated last month
Alternatives and similar repositories for CellphoneDB
Users that are interested in CellphoneDB are comparing it to the libraries listed below
Sorting:
- ☆356Updated 3 years ago
- A package to help convert different single-cell data formats to each other☆433Updated last year
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆520Updated 2 weeks ago
- NicheNet: predict active ligand-target links between interacting cells☆550Updated last week
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆429Updated last week
- A tool for semi-automatic cell type classification☆385Updated 2 weeks ago
- This is the alpha version of the CellOracle package☆366Updated 6 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆379Updated 2 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆347Updated 4 months ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆460Updated last year
- Scanpy Tutorials.☆218Updated this week
- ☆269Updated 8 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆365Updated 3 weeks ago
- scripts and notebooks from sanbomics☆426Updated 7 months ago
- RNA Velocity generalized through dynamical modeling☆451Updated 4 months ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆522Updated last year
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆497Updated last week
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆338Updated 11 months ago
- High dimensional weighted gene co-expression network analysis☆420Updated this week
- Reference mapping for single-cell genomics☆374Updated last month
- R package for integrating and analyzing multiple single-cell datasets☆417Updated 2 months ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆423Updated 4 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆229Updated 5 months ago
- A toolkit for single-cell immune profiling☆341Updated this week
- LIANA+: an all-in-one framework for cell-cell communication☆219Updated this week
- Benchmarking analysis of data integration tools☆363Updated 6 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆299Updated 4 years ago
- ☆391Updated last week
- R package for detecting doublets in single-cell RNA sequencing data☆480Updated 3 months ago
- Interpretation of cell states using reference single-cell maps☆281Updated last month