ventolab / CellphoneDBLinks
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
☆399Updated 2 weeks ago
Alternatives and similar repositories for CellphoneDB
Users that are interested in CellphoneDB are comparing it to the libraries listed below
Sorting:
- A package to help convert different single-cell data formats to each other☆428Updated last year
- ☆355Updated 3 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆420Updated 2 months ago
- A tool for semi-automatic cell type classification☆375Updated last month
- NicheNet: predict active ligand-target links between interacting cells☆548Updated 2 weeks ago
- This is the alpha version of the CellOracle package☆361Updated 5 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆375Updated last month
- R package for detecting doublets in single-cell RNA sequencing data☆477Updated 3 months ago
- A toolkit for single-cell immune profiling☆336Updated this week
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆423Updated 4 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆514Updated last year
- Scanpy Tutorials.☆215Updated this week
- Interpretation of cell states using reference single-cell maps☆278Updated last month
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆509Updated last year
- Analysis Pipeline for Single Cell ATAC-seq☆318Updated 2 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆298Updated 4 years ago
- ☆388Updated 2 weeks ago
- ☆268Updated 7 months ago
- High dimensional weighted gene co-expression network analysis☆413Updated 3 weeks ago
- R package for integrating and analyzing multiple single-cell datasets☆416Updated last month
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆456Updated last year
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆495Updated last month
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆227Updated 2 years ago
- Reference mapping for single-cell genomics☆370Updated last month
- tools and notes for spatial omics☆302Updated 3 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆218Updated this week
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆332Updated 11 months ago
- Benchmarking analysis of data integration tools☆363Updated 5 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆343Updated 3 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆381Updated 2 weeks ago