swaruplabUCI / ArchRtoSignacLinks
An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
☆36Updated 11 months ago
Alternatives and similar repositories for ArchRtoSignac
Users that are interested in ArchRtoSignac are comparing it to the libraries listed below
Sorting:
- Functional Inference of Gene Regulation☆46Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 9 months ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆40Updated 2 weeks ago
- R package for pathway analysis in scRNA-seq data☆75Updated 11 months ago
- cell type specific, trait-associated gene regulation☆27Updated 4 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 8 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 9 months ago
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- ☆55Updated last month
- ☆27Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- ☆32Updated 6 months ago
- Draw phylogenetic trees of tumor evolution☆81Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆49Updated 9 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- scWGCNA☆61Updated 2 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆76Updated 3 months ago
- iterative clustering pipeline of big single cell datasets.☆33Updated 3 months ago
- ☆37Updated last year
- ☆50Updated 5 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 11 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆40Updated last month
- Pan-Cancer Single Cell Classifier☆74Updated last year
- ☆10Updated 2 years ago