swaruplabUCI / ArchRtoSignac
An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
☆32Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for ArchRtoSignac
- R package for pathway analysis in scRNA-seq data☆62Updated 2 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆61Updated 6 months ago
- Functional Inference of Gene Regulation☆36Updated 4 months ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆33Updated last month
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆66Updated 2 months ago
- ☆53Updated 10 months ago
- scWGCNA☆54Updated 2 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated last month
- Pan-Cancer Single Cell Classifier☆60Updated 5 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆24Updated 3 weeks ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated 3 weeks ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆39Updated this week
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆38Updated 4 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆23Updated 5 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆67Updated 2 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆44Updated 3 weeks ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆19Updated 3 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆50Updated last month
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆33Updated 5 months ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆46Updated 3 weeks ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆43Updated 3 years ago
- ☆24Updated 3 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆53Updated 6 months ago
- Unified access to several second-generation deconvolution methods☆54Updated this week
- ☆39Updated 3 years ago
- Single cell RNA-seq analysis bundle☆33Updated 5 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆25Updated 3 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆25Updated 2 years ago