Alternatives and similar repositories for ArchRtoSignac

Users that are interested in ArchRtoSignac are comparing it to the libraries listed below

• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆74Updated 9 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆44Updated 10 months ago
• colomemaria / epiAneufinder
  R package to detect breakpoints and assign somies to scATAC-seq data
  ☆39Updated last week
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆65Updated 7 months ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆28Updated 5 months ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• kharchenkolab / scITD
  Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition
  ☆60Updated last year
• gabrielakinker / CCLE_heterogeneity
  ☆55Updated last year
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆71Updated last year
• HYsxe / PRINT
  ☆35Updated 8 months ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated 7 months ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆32Updated last month
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• kkdey / GSSG
  Gene Set + S2G strategy annotations analyzed for disease architecture
  ☆51Updated 2 years ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆68Updated last month
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆37Updated 4 years ago
• UPSUTER / GEMLI
  ☆32Updated 4 months ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆81Updated 9 months ago
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆74Updated last month
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆79Updated this week
• aertslab / create_cisTarget_databases
  Create cisTarget databases
  ☆50Updated 3 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆60Updated 2 years ago
• yal054 / snATACutils
  ☆27Updated 10 months ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆37Updated last year
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆26Updated 2 years ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆26Updated 2 months ago
• lhe17 / nebula
  ☆41Updated 2 weeks ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆30Updated 11 months ago
• KlugerLab / DAseq
  ☆41Updated 4 years ago
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆56Updated 3 years ago