An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
☆38Aug 22, 2024Updated last year
Alternatives and similar repositories for ArchRtoSignac
Users that are interested in ArchRtoSignac are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆30Sep 22, 2023Updated 2 years ago
- Functional Inference of Gene Regulation☆52Jul 5, 2024Updated last year
- ☆62Dec 8, 2025Updated 3 months ago
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆13Dec 7, 2021Updated 4 years ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Mar 16, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Parse ArchR arrow files to anndata h5ad☆16Dec 14, 2023Updated 2 years ago
- ☆38Sep 5, 2024Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 7 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Aug 30, 2024Updated last year
- ☆11Apr 4, 2023Updated 2 years ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆51Nov 1, 2025Updated 4 months ago
- ☆20Jun 26, 2025Updated 9 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆128Mar 9, 2026Updated 2 weeks ago
- ☆10Dec 11, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A tool for detecting somatic variants in single cell data☆218Sep 15, 2024Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆83Apr 21, 2025Updated 11 months ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆450Feb 18, 2025Updated last year
- scVI extension for unspliced RNA☆15May 18, 2025Updated 10 months ago
- Multiome GRN inference.☆133Apr 19, 2024Updated last year
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆14Nov 26, 2023Updated 2 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆249Jan 16, 2026Updated 2 months ago
- ☆18May 12, 2023Updated 2 years ago
- Merge fastq files split over lanes☆20Feb 13, 2018Updated 8 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A guide to using a Seurat object in conjunction with RNA Velocity☆141Dec 25, 2021Updated 4 years ago
- Single-cell disease relevance score (scDRS)☆177Sep 2, 2025Updated 6 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Jan 4, 2022Updated 4 years ago
- ☆122Sep 4, 2025Updated 6 months ago
- ☆117Apr 24, 2024Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated last month
- Reproducible Snakemake workflow for benchmarking single-cell chromatin accessibility analysis methods, published in https://doi.org/10.11…☆17Jan 24, 2026Updated 2 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆118Jan 22, 2024Updated 2 years ago
- cell type specific, trait-associated gene regulation☆29Mar 31, 2025Updated 11 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆88Oct 6, 2023Updated 2 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆423Sep 4, 2025Updated 6 months ago
- Assessing the purity of single cell population☆143Jun 3, 2022Updated 3 years ago
- Code repository for single-cell atlas of Alzheimer's disease progression across brain regions☆42Apr 23, 2024Updated last year
- BANKSY: spatial clustering☆138Oct 15, 2025Updated 5 months ago
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- Genearlized mapping scripts for RNA-seq and Patch-seq data☆18Sep 29, 2025Updated 6 months ago