An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
☆40Aug 22, 2024Updated 2 years ago
Alternatives and similar repositories for ArchRtoSignac
Users that are interested in ArchRtoSignac are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆31Sep 22, 2023Updated 2 years ago
- Functional Inference of Gene Regulation☆55Jul 5, 2024Updated 2 years ago
- ☆69Apr 22, 2026Updated 4 months ago
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆13Dec 7, 2021Updated 4 years ago
- ☆39Sep 5, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Jun 29, 2026Updated 2 months ago
- Parse ArchR arrow files to anndata h5ad☆16Dec 14, 2023Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆90Jul 28, 2026Updated last month
- ☆16Apr 8, 2026Updated 4 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated 2 years ago
- ☆10Sep 20, 2022Updated 3 years ago
- Multiome GRN inference.☆142Apr 10, 2026Updated 4 months ago
- ☆11Apr 4, 2023Updated 3 years ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆51May 17, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Context specific and dynamic gene regulatory network reconstruction and analysis☆131Aug 3, 2026Updated last month
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆464Feb 18, 2025Updated last year
- Single-cell disease relevance score (scDRS)☆195Aug 27, 2026Updated last week
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆99Jul 1, 2021Updated 5 years ago
- ☆20Jun 26, 2025Updated last year
- ☆10Dec 11, 2024Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆87Apr 21, 2025Updated last year
- A tool for detecting somatic variants in single cell data☆229Sep 15, 2024Updated last year
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆18Jul 14, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆15Nov 26, 2023Updated 2 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆264Jan 16, 2026Updated 7 months ago
- ☆18May 12, 2023Updated 3 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆142Dec 25, 2021Updated 4 years ago
- cell type specific, trait-associated gene regulation☆30Aug 5, 2026Updated last month
- ☆120Apr 24, 2024Updated 2 years ago
- Merge fastq files split over lanes☆20Feb 13, 2018Updated 8 years ago
- ☆130Sep 4, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆36Jan 4, 2022Updated 4 years ago
- R toolkit for the analysis of single-cell chromatin data☆425Updated this week
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Jan 30, 2026Updated 7 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆125Jan 22, 2024Updated 2 years ago
- Gene set scoring for single-cell data☆207Apr 29, 2026Updated 4 months ago
- Reproducible Snakemake workflow for benchmarking single-cell chromatin accessibility analysis methods, published in https://doi.org/10.11…☆17Jan 24, 2026Updated 7 months ago
- ☆134Aug 23, 2026Updated 2 weeks ago