Cell-type Relationship Analysis Workflow Done Across Distances
☆42Nov 18, 2025Updated 10 months ago
Alternatives and similar repositories for CRAWDAD
Users that are interested in CRAWDAD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multi-slice Spatial Transcriptome Domain Analysis.☆12Dec 13, 2024Updated last year
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Jun 29, 2026Updated 2 months ago
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 5 months ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆46Sep 11, 2026Updated last week
- BANKSY: spatial clustering☆162May 30, 2026Updated 3 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆134Updated this week
- ☆13Dec 14, 2023Updated 2 years ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated 2 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆16Aug 17, 2023Updated 3 years ago
- Compute the neighborhood consolidation matrix and identify SHRs☆15Jun 12, 2025Updated last year
- ☆18Nov 24, 2024Updated last year
- physics-informed neural network based method for solving single-cell population dynamics☆17Updated this week
- ☆12May 24, 2024Updated 2 years ago
- From geospatial to spatial -omics☆103Jul 24, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆30Oct 4, 2024Updated last year
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- ANS_signature_scoring: A gene expression signature scoring Python package.☆20Jan 18, 2026Updated 8 months ago
- Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data☆18Jun 19, 2025Updated last year
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial dat…☆325Updated this week
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆19Sep 19, 2025Updated last year
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆160Aug 3, 2025Updated last year
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆19Aug 20, 2026Updated last month
- Pipeline to predict off-target binding via probe sequences☆16Mar 13, 2026Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆22Updated this week
- R package implementation of Milo for testing for differential abundance in KNN graphs☆448Aug 25, 2026Updated 3 weeks ago
- Spatially-aware quality control for spatial transcriptomics☆17Sep 8, 2026Updated last week
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆16Dec 15, 2025Updated 9 months ago
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago
- Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis☆19Apr 23, 2025Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆23May 27, 2026Updated 3 months ago
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆32Dec 3, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆24Sep 30, 2022Updated 3 years ago
- An R package for visualising cell-cell interactions☆47Mar 16, 2026Updated 6 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆57Jan 6, 2025Updated last year
- ☆28Apr 9, 2025Updated last year
- Extension of SpatialExperiment with sf☆58May 6, 2026Updated 4 months ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated last year
- Stitch multiple Visium slides together☆17Oct 16, 2025Updated 11 months ago