JEFworks-Lab / CRAWDADLinks
Cell-type Relationship Analysis Workflow Done Across Distances
☆38Updated last month
Alternatives and similar repositories for CRAWDAD
Users that are interested in CRAWDAD are comparing it to the libraries listed below
Sorting:
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated last month
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- ☆44Updated last month
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last month
- Pan-Cancer Single Cell Classifier☆81Updated last year
- A repository for benchmarking spatial deconvolution and mapping tools☆35Updated 7 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆92Updated 7 months ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 3 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Updated 6 months ago
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- ☆48Updated last month
- ☆60Updated 4 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated last week
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆81Updated 3 years ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆56Updated 2 weeks ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 4 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆12Updated 2 years ago
- iterative clustering pipeline of big single cell datasets.☆35Updated 3 months ago
- List of Spatial Transcriptomics related Tools organized per category☆98Updated last week
- ☆53Updated 2 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆34Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆30Updated 3 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Updated last year
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆39Updated this week
- Profile purification of single-cell spatial transcriptomics data☆26Updated last month
- ☆30Updated 7 months ago
- ☆57Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago