ventolab / cellphonedbviz
Interactive visualisation of CellphoneDB results
☆9Updated 2 weeks ago
Alternatives and similar repositories for cellphonedbviz:
Users that are interested in cellphonedbviz are comparing it to the libraries listed below
- ☆33Updated 4 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 10 months ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆19Updated 3 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 months ago
- Paired Insertion Counting for snATAC-seq data☆17Updated 5 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆27Updated last week
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 10 months ago
- ☆29Updated last year
- A repository for benchmarking spatial deconvolution and mapping tools☆28Updated last week
- Spatial One☆19Updated 3 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆21Updated 2 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆33Updated last year
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆54Updated 3 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆14Updated 3 months ago
- Individual level Differential Expression Analysis for Single cells☆23Updated 2 years ago
- ☆16Updated 6 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆34Updated 3 years ago
- .h5mu files interface for Seurat☆28Updated last year
- ☆22Updated 3 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆29Updated 2 months ago
- R package for analysing single cell data☆50Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- The algorithm, supervised Capacity Mapping (supCPM), to visualize scRNA-seq data☆7Updated 5 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- R package for computing Association Plots☆15Updated 2 months ago
- ☆29Updated last week
- Single-cell Case Control Analysis☆48Updated 2 months ago