Interactive visualisation of CellphoneDB results
☆12Jan 15, 2025Updated last year
Alternatives and similar repositories for cellphonedbviz
Users that are interested in cellphonedbviz are comparing it to the libraries listed below
Sorting:
- Fast algorithms for GLM-PCA.☆14Mar 12, 2025Updated 11 months ago
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- ☆13Jun 6, 2024Updated last year
- ☆18Feb 5, 2025Updated last year
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆20Feb 10, 2026Updated 3 weeks ago
- ☆13Feb 12, 2026Updated 3 weeks ago
- R package for computing Association Plots☆17Nov 4, 2024Updated last year
- Single cell omics biology annotations☆54Feb 26, 2026Updated last week
- A end-to-end scRNA-seq analysis pipeline for cross-group comparison☆19May 18, 2025Updated 9 months ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- ☆19Feb 27, 2026Updated last week
- Cellsnake tool main repo☆36Feb 22, 2024Updated 2 years ago
- ☆13Aug 9, 2022Updated 3 years ago
- This repository contains codes used for the human fetal limb cell atlas.☆17Jan 28, 2025Updated last year
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Oct 17, 2024Updated last year
- Python package to interactively annotate histological images within a jupyter notebook☆18Oct 20, 2025Updated 4 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated last year
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆16Oct 5, 2024Updated last year
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Jul 28, 2025Updated 7 months ago
- ☆46Jan 28, 2026Updated last month
- scVI extension for unspliced RNA☆16May 18, 2025Updated 9 months ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated 11 months ago
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆18Mar 18, 2024Updated last year
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆42Mar 2, 2025Updated last year
- Package for the analysis of Transcripts outside segmented cells in ST data☆26Feb 23, 2026Updated last week
- SPatial INtegration of spatially resolved transcriptomics datasets☆18Mar 14, 2025Updated 11 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 6 months ago
- ☆41Jun 24, 2025Updated 8 months ago
- Paired Insertion Counting for snATAC-seq data☆19May 12, 2025Updated 9 months ago
- A set of files to do genomics analysis on python☆18Jun 5, 2025Updated 9 months ago
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Nov 26, 2023Updated 2 years ago
- ☆22Feb 2, 2025Updated last year
- scTM: A package for topic modelling in transcriptomics data☆24May 1, 2024Updated last year
- Phenotype Associated Spatial Signature Analysis with Graph-based Embedding☆26Mar 5, 2025Updated last year
- ☆52Oct 9, 2025Updated 4 months ago
- Translates an AnnData object with mouse gene symbols into one with human gene symbols by mapping orthologs from biomart.☆29Jun 10, 2025Updated 8 months ago
- AI-Driven Code Generation, Explanation and Execution for Data Analysis☆23Sep 11, 2024Updated last year
- ☆29Sep 4, 2023Updated 2 years ago