ventolab / cellphonedbvizLinks
Interactive visualisation of CellphoneDB results
☆10Updated 8 months ago
Alternatives and similar repositories for cellphonedbviz
Users that are interested in cellphonedbviz are comparing it to the libraries listed below
Sorting:
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆39Updated this week
- ☆41Updated last month
- Paired Insertion Counting for snATAC-seq data☆17Updated 4 months ago
- ☆30Updated 7 months ago
- .h5mu files interface for Seurat☆31Updated last year
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆20Updated this week
- ☆11Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 7 months ago
- ☆29Updated 2 years ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆13Updated 11 months ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated this week
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆64Updated 3 weeks ago
- ☆14Updated last month
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- A end-to-end scRNA-seq analysis pipeline for cross-group comparison☆18Updated 4 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 11 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆34Updated 4 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated last week
- ☆39Updated 4 years ago
- ☆37Updated 7 months ago
- Single-cell Case Control Analysis☆52Updated this week
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆22Updated last week
- Pipeline to run scE2G☆28Updated last week
- This repository contains codes used for the human fetal limb cell atlas.☆17Updated 8 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated last month
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆30Updated this week
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆26Updated 9 months ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Updated last year
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last year