Alternatives and similar repositories for ProjecTILs

Users that are interested in ProjecTILs are comparing it to the libraries listed below

• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆221Updated last year
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆233Updated 2 years ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆211Updated 2 months ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆296Updated 2 years ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆204Updated last week
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆139Updated 3 years ago
• IanevskiAleksandr / sc-type
  ☆275Updated 11 months ago
• satijalab / seurat-data
  Dataset distribution for Seurat
  ☆146Updated 7 months ago
• MarioniLab / miloR
  R package implementation of Milo for testing for differential abundance in KNN graphs
  ☆398Updated last month
• xuranw / MuSiC
  Multi-subject Single Cell Deconvolution
  ☆275Updated last year
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆191Updated last month
• kstreet13 / slingshot
  Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
  ☆310Updated last year
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆196Updated last week
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆353Updated last week
• neurorestore / Libra
  ☆177Updated 5 months ago
• sunduanchen / Scissor
  Scissor package
  ☆238Updated last year
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆188Updated this week
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆229Updated this week
• Danko-Lab / BayesPrism
  A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression
  ☆209Updated 4 months ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆210Updated 2 months ago
• mojaveazure / seurat-disk
  Interfaces for HDF5-based Single Cell File Formats
  ☆167Updated last year
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆166Updated 2 months ago
• rcastelo / GSVA
  Gene set variation analysis
  ☆226Updated last week
• huayc09 / SeuratExtend
  ☆179Updated last month
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆176Updated 5 months ago
• kharchenkolab / conos
  R package for the joint analysis of multiple single-cell RNA-seq datasets
  ☆215Updated last year
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆276Updated last week
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆122Updated 2 years ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆191Updated 11 months ago
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆168Updated 2 years ago