Alternatives and similar repositories for ProjecTILs:

Users that are interested in ProjecTILs are comparing it to the libraries listed below

• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆332Updated last month
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆201Updated 8 months ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆273Updated 2 years ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆187Updated 2 months ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆191Updated last month
• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆221Updated this week
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆252Updated last week
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆227Updated last year
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆190Updated 2 weeks ago
• navinlabcode / copykat
  ☆231Updated 10 months ago
• MarioniLab / miloR
  R package implementation of Milo for testing for differential abundance in KNN graphs
  ☆371Updated 5 months ago
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆279Updated 2 years ago
• broadinstitute / CellBender
  CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
  ☆324Updated 9 months ago
• welch-lab / liger
  R package for integrating and analyzing multiple single-cell datasets
  ☆409Updated last week
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆199Updated 7 months ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆180Updated 5 months ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆144Updated 3 months ago
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆162Updated last year
• kstreet13 / slingshot
  Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
  ☆290Updated last year
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆292Updated 4 years ago
• sunduanchen / Scissor
  Scissor package
  ☆216Updated 11 months ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆192Updated 2 weeks ago
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆179Updated 5 months ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆173Updated 2 weeks ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆138Updated 3 years ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆195Updated 11 months ago
• satijalab / seurat-data
  Dataset distribution for Seurat
  ☆137Updated last month
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated 2 years ago
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆169Updated last month
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆419Updated last year