Alternatives and similar repositories for ProjecTILs

Users that are interested in ProjecTILs are comparing it to the libraries listed below

• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆211Updated 11 months ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆229Updated 2 years ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆194Updated 2 months ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆201Updated 3 months ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆284Updated 2 years ago
• xuranw / MuSiC
  Multi-subject Single Cell Deconvolution
  ☆263Updated last year
• MarioniLab / miloR
  R package implementation of Milo for testing for differential abundance in KNN graphs
  ☆386Updated last month
• RGLab / MAST
  Tools and methods for analysis of single cell assay data in R
  ☆243Updated last year
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆199Updated last month
• dviraran / xCell
  Cell types enrichment analysis
  ☆198Updated last year
• kstreet13 / slingshot
  Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
  ☆298Updated last year
• satijalab / seurat-data
  Dataset distribution for Seurat
  ☆142Updated 4 months ago
• sunduanchen / Scissor
  Scissor package
  ☆226Updated last year
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆178Updated 3 weeks ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆191Updated last month
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆341Updated this week
• navinlabcode / copykat
  ☆242Updated last year
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆264Updated this week
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆290Updated 3 weeks ago
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆184Updated last month
• mojaveazure / seurat-disk
  Interfaces for HDF5-based Single Cell File Formats
  ☆165Updated last year
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆182Updated last week
• statOmics / tradeSeq
  TRAjectory-based Differential Expression analysis for SEQuencing data
  ☆269Updated 3 weeks ago
• IanevskiAleksandr / sc-type
  ☆269Updated 8 months ago
• kharchenkolab / pagoda2
  R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
  ☆232Updated last year
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆172Updated last month
• Oshlack / splatter
  Simple simulation of single-cell RNA sequencing data
  ☆228Updated this week
• neurorestore / Libra
  ☆172Updated 2 months ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆171Updated this week
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆217Updated 2 weeks ago