carmonalab / ProjecTILsLinks
Interpretation of cell states using reference single-cell maps
☆298Updated 3 months ago
Alternatives and similar repositories for ProjecTILs
Users that are interested in ProjecTILs are comparing it to the libraries listed below
Sorting:
- LIANA: a LIgand-receptor ANalysis frAmework☆224Updated last year
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆234Updated 2 years ago
- Methods for detecting doublets in single-cell sequencing data☆214Updated 3 weeks ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆297Updated 3 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆310Updated last year
- Multi-subject Single Cell Deconvolution☆275Updated last year
- A toolkit for single-cell immune profiling☆354Updated last week
- Multi-sample multi-group scRNA-seq analysis tools☆209Updated 2 weeks ago
- Tools and methods for analysis of single cell assay data in R☆257Updated 3 weeks ago
- Scissor package☆240Updated last year
- Dataset distribution for Seurat☆148Updated 8 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆211Updated 3 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆400Updated 2 months ago
- Clone of the Bioconductor repository for the SingleR package.☆197Updated 3 weeks ago
- reticulate-free single cell format conversion☆193Updated last month
- R package for integrating and analyzing multiple single-cell datasets☆421Updated last week
- ☆276Updated last year
- Conversion between scRNA-seq objects☆191Updated this week
- Fast Wilcoxon and auROC☆195Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆168Updated 3 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆277Updated this week
- ☆255Updated last month
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆299Updated last month
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago
- Cell types enrichment analysis☆204Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆307Updated 5 years ago
- Easy single cell analysis platform for enrichment☆197Updated 2 weeks ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆239Updated 2 months ago
- Some tools for plotting single-cell data☆176Updated 5 months ago
- ☆188Updated last week