Alternatives and similar repositories for ProjecTILs

Users that are interested in ProjecTILs are comparing it to the libraries listed below

• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆227Updated last year
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆307Updated 3 years ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆236Updated 2 years ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆223Updated 3 weeks ago
• xuranw / MuSiC
  Multi-subject Single Cell Deconvolution
  ☆278Updated last year
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆357Updated last month
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆122Updated 2 years ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆215Updated 3 weeks ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆213Updated 2 weeks ago
• IanevskiAleksandr / sc-type
  ☆282Updated last year
• dviraran / xCell
  Cell types enrichment analysis
  ☆206Updated last year
• sunduanchen / Scissor
  Scissor package
  ☆247Updated last year
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆199Updated this week
• neurorestore / Libra
  ☆181Updated 8 months ago
• kharchenkolab / pagoda2
  R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
  ☆242Updated 4 months ago
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆254Updated this week
• kstreet13 / slingshot
  Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
  ☆322Updated last year
• RGLab / MAST
  Tools and methods for analysis of single cell assay data in R
  ☆257Updated 2 months ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆195Updated 2 weeks ago
• satijalab / seurat-data
  Dataset distribution for Seurat
  ☆151Updated 10 months ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆140Updated 4 years ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆201Updated last month
• MarioniLab / miloR
  R package implementation of Milo for testing for differential abundance in KNN graphs
  ☆407Updated 4 months ago
• statOmics / tradeSeq
  TRAjectory-based Differential Expression analysis for SEQuencing data
  ☆285Updated 6 months ago
• mojaveazure / seurat-disk
  Interfaces for HDF5-based Single Cell File Formats
  ☆170Updated 2 years ago
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆203Updated this week
• welch-lab / liger
  R package for integrating and analyzing multiple single-cell datasets
  ☆422Updated 3 weeks ago
• Irrationone / cellassign
  Automated, probabilistic assignment of cell types in scRNA-seq data
  ☆209Updated 3 years ago
• navinlabcode / copykat
  ☆260Updated 2 months ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆285Updated 3 weeks ago