Alternatives and similar repositories for ProjecTILs

Users that are interested in ProjecTILs are comparing it to the libraries listed below

• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆226Updated last year
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆301Updated 3 years ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆234Updated 2 years ago
• kstreet13 / slingshot
  Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
  ☆320Updated last year
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆213Updated last week
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆199Updated 2 months ago
• xuranw / MuSiC
  Multi-subject Single Cell Deconvolution
  ☆276Updated last year
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆212Updated 4 months ago
• satijalab / seurat-data
  Dataset distribution for Seurat
  ☆148Updated 9 months ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆222Updated this week
• IanevskiAleksandr / sc-type
  ☆280Updated last year
• sunduanchen / Scissor
  Scissor package
  ☆243Updated last year
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆194Updated this week
• navinlabcode / copykat
  ☆259Updated 2 months ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆200Updated last year
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆140Updated 3 years ago
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆247Updated last week
• kharchenkolab / pagoda2
  R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
  ☆241Updated 4 months ago
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆356Updated last week
• RGLab / MAST
  Tools and methods for analysis of single cell assay data in R
  ☆258Updated 2 months ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆205Updated last year
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆282Updated last week
• mojaveazure / seurat-disk
  Interfaces for HDF5-based Single Cell File Formats
  ☆170Updated 2 years ago
• SGDDNB / ShinyCell
  Shiny Interactive Web Apps for Single-Cell Data
  ☆202Updated 7 months ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆184Updated 2 months ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆199Updated 3 weeks ago
• huayc09 / SeuratExtend
  ☆195Updated 2 weeks ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆172Updated 4 months ago
• rcastelo / GSVA
  Gene set variation analysis
  ☆232Updated this week
• MarioniLab / miloR
  R package implementation of Milo for testing for differential abundance in KNN graphs
  ☆404Updated 3 months ago