Interpretation of cell states using reference single-cell maps
☆319Dec 19, 2025Updated 5 months ago
Alternatives and similar repositories for ProjecTILs
Users that are interested in ProjecTILs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- marker-based purification of cell types from single-cell RNA-seq datasets☆141Mar 13, 2026Updated 2 months ago
- A toolkit for single-cell immune profiling☆368May 12, 2026Updated last week
- R package implementation of Milo for testing for differential abundance in KNN graphs☆432May 11, 2026Updated last week
- Easy single cell analysis platform for enrichment☆223Apr 3, 2026Updated last month
- A repository of case studies using ProjecTILs☆15Jul 26, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- R package for semi-supervised single-cell data integration☆98Jan 27, 2026Updated 3 months ago
- R package to infer biological activities from omics data using a collection of methods.☆295Dec 16, 2025Updated 5 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆229Apr 28, 2026Updated 3 weeks ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆783Jan 6, 2024Updated 2 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆295Jun 17, 2025Updated 11 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆240Aug 7, 2024Updated last year
- AUCell: score single cells with gene regulatory networks☆191Mar 9, 2024Updated 2 years ago
- A Toolbox for Spatial Transcriptomics Analysis☆167May 6, 2025Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆429Feb 4, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆125May 3, 2026Updated 2 weeks ago
- Interactively analyze single cell genomic data☆187Jan 14, 2026Updated 4 months ago
- Methods to discover gene programs on single-cell data☆184Apr 1, 2026Updated last month
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆122Apr 26, 2025Updated last year
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆334Apr 23, 2024Updated 2 years ago
- NicheNet: predict active ligand-target links between interacting cells☆646Nov 12, 2025Updated 6 months ago
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆339Nov 18, 2025Updated 6 months ago
- High dimensional weighted gene co-expression network analysis☆473Mar 13, 2026Updated 2 months ago
- Methods for detecting doublets in single-cell sequencing data☆248Feb 12, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A scanpy extension to analyse single-cell TCR and BCR data.☆252May 11, 2026Updated last week
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year
- A package to help convert different single-cell data formats to each other☆465Feb 20, 2026Updated 3 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆112Dec 18, 2025Updated 5 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆438Apr 11, 2026Updated last month
- Inferring CNV from Single-Cell RNA-Seq☆666Nov 14, 2025Updated 6 months ago
- Cell type prioritization in single-cell data☆141Mar 26, 2026Updated last month
- A list of scRNA-seq analysis tools☆791Updated this week
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆128Nov 10, 2025Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆327Nov 1, 2022Updated 3 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆261Jan 10, 2026Updated 4 months ago
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆14Feb 7, 2024Updated 2 years ago
- Reference mapping for single-cell genomics☆404Mar 21, 2026Updated 2 months ago
- Spatial Transcriptomics Capture Location Deconvolution☆207Oct 20, 2025Updated 7 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆88Dec 4, 2025Updated 5 months ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆539May 13, 2026Updated last week