carmonalab / ProjecTILs
Interpretation of cell states using reference single-cell maps
☆268Updated 2 weeks ago
Alternatives and similar repositories for ProjecTILs:
Users that are interested in ProjecTILs are comparing it to the libraries listed below
- LIANA: a LIgand-receptor ANalysis frAmework☆196Updated 7 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆266Updated 2 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆226Updated last year
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆247Updated this week
- A toolkit for single-cell immune profiling☆328Updated this week
- Clone of the Bioconductor repository for the SingleR package.☆185Updated last month
- Single-cell Transcriptome and Regulome Analysis Pipeline☆278Updated 2 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆361Updated 4 months ago
- Gene set variation analysis☆212Updated this week
- Dataset distribution for Seurat☆135Updated 2 weeks ago
- ☆257Updated 4 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆270Updated 5 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆314Updated 8 months ago
- A tool for detecting somatic variants in single cell data☆193Updated 6 months ago
- Conversion between scRNA-seq objects☆164Updated this week
- Multi-sample multi-group scRNA-seq analysis tools☆182Updated last month
- Scissor package☆211Updated 10 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆137Updated 3 years ago
- Interactively analyze single cell genomic data☆182Updated last month
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆221Updated 3 months ago
- ☆226Updated 8 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆178Updated last month
- R package for integrating and analyzing multiple single-cell datasets☆408Updated 2 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆286Updated 10 months ago
- Scaling Single Cell Analysis to Millions of Cells☆185Updated last week
- Cell types enrichment analysis☆194Updated 9 months ago
- ☆163Updated 6 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆140Updated 2 months ago
- Methods for detecting doublets in single-cell sequencing data☆184Updated last month