Alternatives and similar repositories for GSVA:

Users that are interested in GSVA are comparing it to the libraries listed below

• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆184Updated last month
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆165Updated this week
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆182Updated 3 weeks ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆178Updated last month
• dtm2451 / dittoSeq
  Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
  ☆197Updated 5 months ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆182Updated last month
• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆221Updated 3 months ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆247Updated this week
• YuLab-SMU / enrichplot
  Visualization of Functional Enrichment Result
  ☆240Updated last week
• neurorestore / Libra
  ☆163Updated 6 months ago
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆327Updated this week
• satijalab / seurat-data
  Dataset distribution for Seurat
  ☆135Updated 2 weeks ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆184Updated last month
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆268Updated 2 weeks ago
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆167Updated 2 weeks ago
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆231Updated last week
• SGDDNB / ShinyCell
  Shiny Interactive Web Apps for Single-Cell Data
  ☆173Updated last year
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆226Updated last year
• mojaveazure / seurat-disk
  Interfaces for HDF5-based Single Cell File Formats
  ☆160Updated last year
• velocyto-team / velocyto.R
  RNA velocity estimation in R
  ☆186Updated last year
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆266Updated 2 years ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆194Updated 9 months ago
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆270Updated 5 months ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆196Updated 7 months ago
• MarioniLab / miloR
  R package implementation of Milo for testing for differential abundance in KNN graphs
  ☆361Updated 4 months ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆175Updated 4 months ago
• huayc09 / SeuratExtend
  ☆127Updated 3 weeks ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated 2 years ago
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆99Updated last year
• RGLab / MAST
  Tools and methods for analysis of single cell assay data in R
  ☆232Updated last year