Alternatives and similar repositories for GSVA

Users that are interested in GSVA are comparing it to the libraries listed below

• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆197Updated 3 weeks ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆209Updated 2 weeks ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆184Updated last month
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆195Updated last year
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆197Updated 2 weeks ago
• SGDDNB / ShinyCell
  Shiny Interactive Web Apps for Single-Cell Data
  ☆199Updated 6 months ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆214Updated 3 weeks ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆211Updated 3 months ago
• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆243Updated 6 months ago
• dtm2451 / dittoSeq
  Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
  ☆205Updated last month
• mojaveazure / seurat-disk
  Interfaces for HDF5-based Single Cell File Formats
  ☆167Updated 2 years ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆277Updated this week
• huayc09 / SeuratExtend
  ☆188Updated last week
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆122Updated 2 years ago
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆176Updated 6 months ago
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆298Updated 3 months ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆204Updated last year
• neurorestore / Libra
  ☆177Updated 6 months ago
• satijalab / seurat-data
  Dataset distribution for Seurat
  ☆148Updated 8 months ago
• velocyto-team / velocyto.R
  RNA velocity estimation in R
  ☆190Updated 2 years ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆224Updated last year
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆236Updated this week
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆138Updated last year
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆273Updated 8 months ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆234Updated 2 years ago
• xuranw / MuSiC
  Multi-subject Single Cell Deconvolution
  ☆275Updated last year
• RGLab / MAST
  Tools and methods for analysis of single cell assay data in R
  ☆257Updated 3 weeks ago
• kstreet13 / slingshot
  Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
  ☆310Updated last year
• statOmics / tradeSeq
  TRAjectory-based Differential Expression analysis for SEQuencing data
  ☆283Updated 4 months ago
• kharchenkolab / pagoda2
  R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
  ☆239Updated 2 months ago