The integration of single cell rank-based gene set enrichment analysis
β152Jan 14, 2026Updated 3 months ago
Alternatives and similar repositories for irGSEA
Users that are interested in irGSEA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Quantifying metabolism activity at the single-cell resolutionβ167Feb 18, 2026Updated last month
- π― tigeR: Tumor Immunotherapy Gene Expression Data Analysis R packageβ54Jan 21, 2026Updated 2 months ago
- scAB detects multiresolution cell states with clinical significanceβ22Nov 14, 2022Updated 3 years ago
- Scissor packageβ259May 10, 2024Updated last year
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq dataβ14Nov 9, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean β’ AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Multi-Omics integration and VIsualization in Cancer Subtypingβ146Jul 19, 2021Updated 4 years ago
- Gene set scoring for single-cell dataβ189Feb 11, 2026Updated 2 months ago
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinomaβ81Oct 29, 2024Updated last year
- Methods for detecting doublets in single-cell sequencing dataβ241Feb 12, 2026Updated 2 months ago
- Accurate and fast cell marker gene identification with COSGβ64Feb 8, 2026Updated 2 months ago
- Useful functions to make your scRNA-seq plot more cool!β384Mar 23, 2026Updated 3 weeks ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!β148Nov 10, 2023Updated 2 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptorβ88Oct 6, 2023Updated 2 years ago
- Senescent Cell Identificationβ51Feb 22, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed genβ¦β69Oct 16, 2025Updated 5 months ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.β¦β284Updated this week
- scGSVA: Perform GSVA for single cell RNA seqβ76Mar 1, 2026Updated last month
- Assessing the purity of single cell populationβ144Jun 3, 2022Updated 3 years ago
- An R package for visualising cell-cell interactionsβ47Mar 16, 2026Updated 3 weeks ago
- β51Feb 16, 2022Updated 4 years ago
- One-step to Cluster and Visualize Gene Expression Matrixβ365Mar 7, 2026Updated last month
- R package for pathway analysis in scRNA-seq dataβ79Aug 17, 2024Updated last year
- scDIOR: Single cell data IO softwaReβ155Feb 15, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.β633Mar 11, 2026Updated last month
- β23Jul 9, 2025Updated 9 months ago
- LIANA: a LIgand-receptor ANalysis frAmeworkβ239Aug 7, 2024Updated last year
- A R package for advanced single cell data vizβ74Aug 29, 2025Updated 7 months ago
- Methods to discover gene programs on single-cell dataβ180Apr 1, 2026Updated last week
- Machine learning-based integrative analysis develops an immune-derived lncRNA signature for improving clinical outcomes in colorectal canβ¦β131May 30, 2025Updated 10 months ago
- NicheNet: predict active ligand-target links between interacting cellsβ636Nov 12, 2025Updated 5 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.β86Mar 19, 2026Updated 3 weeks ago
- High dimensional weighted gene co-expression network analysisβ469Mar 13, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Bonus Credits β’ AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- An implement R package to visualize GSEA resultsβ217Dec 8, 2025Updated 4 months ago
- Construct Tumor Transition Zone Microenvironmentβ57Jun 25, 2025Updated 9 months ago
- Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networksβ27Apr 3, 2026Updated last week
- Analysis of cell-cell communication at single-cell resolutionβ106Sep 10, 2024Updated last year
- Pan-Cancer Single Cell Classifierβ85May 30, 2024Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transβ¦β185Aug 12, 2025Updated 8 months ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".β133Sep 6, 2024Updated last year