xleizi / easySCFLinks
☆45Updated 2 months ago
Alternatives and similar repositories for easySCF
Users that are interested in easySCF are comparing it to the libraries listed below
Sorting:
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Gene group activity utility functions for Scanpy☆84Updated 8 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆43Updated 3 weeks ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 3 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 5 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆77Updated 4 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 4 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 2 weeks ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated this week
- Single-cell Lung Cancer Atlas with 1.2M cells☆68Updated 7 months ago
- R implementation of GeneTrajectory☆63Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆50Updated 9 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆64Updated 9 months ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆61Updated 7 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆88Updated last month
- ☆56Updated this week
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆78Updated 3 years ago
- ☆37Updated 2 years ago
- Accurate and fast cell marker gene identification with COSG☆47Updated 5 months ago
- Unified access to several second-generation deconvolution methods☆73Updated 3 weeks ago
- ☆58Updated last year
- ☆56Updated last year
- Pan-Cancer Single Cell Classifier☆77Updated last year
- ☆40Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 3 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆83Updated 2 years ago
- ☆55Updated 11 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆53Updated 2 years ago