theislab / anndata2riLinks
Convert between AnnData and SingleCellExperiment
☆143Updated last week
Alternatives and similar repositories for anndata2ri
Users that are interested in anndata2ri are comparing it to the libraries listed below
Sorting:
- A Bayesian model for compositional single-cell data analysis☆188Updated last month
- Python implementation of Milo for differential abundance testing on KNN graph☆81Updated 11 months ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- ☆131Updated 2 years ago
- AUCell: score single cells with gene regulatory networks☆183Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆81Updated last year
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆112Updated 2 months ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆161Updated 2 weeks ago
- software to detect doublets☆96Updated last year
- Metacells - Single-cell RNA Sequencing Analysis☆117Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆114Updated last year
- Conversion between scRNA-seq objects☆198Updated last month
- R package to access DoRothEA's regulons☆155Updated last year
- Episcanpy: Epigenomics Single Cell Analysis in Python☆149Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆127Updated 2 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆128Updated 9 months ago
- Analysis of cell-cell communication at single-cell resolution☆106Updated last year
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆179Updated 10 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆169Updated 2 years ago
- data and model repository for single-cell data☆136Updated 2 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆104Updated last month
- Significance analysis for clustering single-cell RNA-sequencing data☆123Updated last year
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆88Updated 3 weeks ago
- Detect doublets in single-cell RNA-seq data☆162Updated 5 years ago
- Tools for single-cell data processing☆132Updated last year
- trajectory inference☆105Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Updated 3 months ago
- Multiome GRN inference.☆135Updated last year
- A Shiny web app for mapping datasets using Seurat v4☆144Updated last year