Convert between AnnData and SingleCellExperiment
☆152Jul 21, 2026Updated this week
Alternatives and similar repositories for anndata2ri
Users that are interested in anndata2ri are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A package to help convert different single-cell data formats to each other☆473Feb 20, 2026Updated 5 months ago
- CellRank: dynamics from multi-view single-cell data☆454Jul 16, 2026Updated last week
- Episcanpy: Epigenomics Single Cell Analysis in Python☆151Dec 5, 2024Updated last year
- Conversion between scRNA-seq objects☆210May 5, 2026Updated 2 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆305Jul 16, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- RNA Velocity generalized through dynamical modeling☆507Feb 25, 2026Updated 5 months ago
- Annotated data.☆761Updated this week
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆627Jun 26, 2025Updated last year
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆462Apr 11, 2026Updated 3 months ago
- This is the alpha version of the CellOracle package☆478Apr 30, 2026Updated 2 months ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- ☆364Dec 9, 2021Updated 4 years ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆281Apr 26, 2026Updated 2 months ago
- A tool for semi-automatic cell type classification☆497May 22, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Benchmarking analysis of data integration tools☆426Apr 27, 2026Updated 2 months ago
- Reference mapping for single-cell genomics☆406Jun 26, 2026Updated 3 weeks ago
- Scanpy Tutorials.☆241Updated this week
- Spatial Single Cell Analysis in Python☆587Updated this week
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆478Jun 6, 2025Updated last year
- Spatial Transcriptomics Capture Location Deconvolution☆210Oct 20, 2025Updated 9 months ago
- data and model repository for single-cell data☆136Dec 21, 2023Updated 2 years ago
- Learning cell communication from spatial graphs of cells☆120Jan 15, 2024Updated 2 years ago
- Differential expression analysis for single-cell RNA-seq data.☆206Oct 21, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Aug 9, 2022Updated 3 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,667Updated this week
- Single-cell analysis in Python. Scales to >100M cells.☆2,523Updated this week
- Clustering scRNAseq by genotypes☆210Apr 30, 2026Updated 2 months ago
- ☆134Nov 17, 2023Updated 2 years ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆182Dec 8, 2022Updated 3 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆306Jun 17, 2025Updated last year
- Geometry-preserving random sampling☆99Oct 29, 2024Updated last year
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆342Apr 23, 2024Updated 2 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆127Updated this week
- Python package to perform enrichment analysis from omics data.☆286Updated this week
- A Bayesian model for compositional single-cell data analysis☆199Jan 13, 2026Updated 6 months ago
- software to detect doublets☆98Dec 28, 2024Updated last year
- Single cell trajectory detection☆329Jul 15, 2026Updated last week
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆335Nov 1, 2022Updated 3 years ago