Convert between AnnData and SingleCellExperiment
☆149Apr 13, 2026Updated this week
Alternatives and similar repositories for anndata2ri
Users that are interested in anndata2ri are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A package to help convert different single-cell data formats to each other☆462Feb 20, 2026Updated last month
- CellRank: dynamics from multi-view single-cell data☆437Apr 6, 2026Updated last week
- Episcanpy: Epigenomics Single Cell Analysis in Python☆151Dec 5, 2024Updated last year
- Conversion between scRNA-seq objects☆204Jan 12, 2026Updated 3 months ago
- RNA Velocity generalized through dynamical modeling☆496Feb 25, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Annotated data.☆730Updated this week
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆595Jun 26, 2025Updated 9 months ago
- This is the alpha version of the CellOracle package☆439Feb 3, 2026Updated 2 months ago
- Panoramic stitching of single cell data☆296Jul 14, 2025Updated 9 months ago
- ☆361Dec 9, 2021Updated 4 years ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆263Updated this week
- A tool for semi-automatic cell type classification☆466Mar 21, 2026Updated 3 weeks ago
- Benchmarking analysis of data integration tools☆409Sep 17, 2025Updated 6 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆427Mar 30, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Reference mapping for single-cell genomics☆401Mar 21, 2026Updated 3 weeks ago
- Scanpy Tutorials.☆235Apr 7, 2026Updated last week
- Spatial Single Cell Analysis in Python☆560Apr 7, 2026Updated last week
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆470Jun 6, 2025Updated 10 months ago
- Spatial Transcriptomics Capture Location Deconvolution☆205Oct 20, 2025Updated 5 months ago
- data and model repository for single-cell data