yulab-ql / mhaESC_genomeLinks
☆13Updated 5 months ago
Alternatives and similar repositories for mhaESC_genome
Users that are interested in mhaESC_genome are comparing it to the libraries listed below
Sorting:
- ☆20Updated 3 years ago
- ☆20Updated last year
- Improving gene isoform quantification with miniQuant☆31Updated 3 months ago
- ☆37Updated 6 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- ☆38Updated 2 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆32Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 5 months ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆22Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- ☆14Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆20Updated 2 weeks ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆70Updated 2 weeks ago
- ☆27Updated 3 years ago
- ☆24Updated last year
- ☆22Updated 2 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- ☆38Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆34Updated 5 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆12Updated 5 years ago
- Blazing fast toolkit to work with .hic and .cool files☆42Updated last week
- ☆23Updated 5 months ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Updated 3 years ago
- Long read to rMATS☆32Updated 2 years ago
- ☆26Updated 8 months ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago