Alternatives and similar repositories for longdust

Users that are interested in longdust are comparing it to the libraries listed below

• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆68Updated 3 months ago
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆61Updated 2 weeks ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆85Updated this week
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated 2 months ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆32Updated 2 years ago
• pierrepeterlongo / back_to_sequences
  ☆45Updated 2 months ago
• warp9seq / minimod
  A bioinformatics tool for viewing and calculating base modification frequencies from BAM files
  ☆37Updated 3 weeks ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• kjenike / panagram
  ☆66Updated last month
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆32Updated this week
• maickrau / ribotin
  ☆36Updated 2 months ago
• lh3 / panmask
  Easy genomic regions for short-read variant calling
  ☆44Updated last month
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆42Updated last month
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆52Updated 7 months ago
• agshumate / LiftoffTools
  ☆28Updated 2 years ago
• ksahlin / ultra
  Long-read splice alignment with high accuracy
  ☆63Updated last year
• SouthGreenPlatform / culebrONT
  A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.
  ☆36Updated 6 months ago
• ekimb / mapquik
  Efficient low-divergence mapping of long reads in minimizer space
  ☆66Updated 2 years ago
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆49Updated 7 months ago
• human-pangenomics / hprc-tutorials
  ☆18Updated last year
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆69Updated last week
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆45Updated last month
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆62Updated 5 years ago
• MariaNattestad / dot
  Dot: An interactive dot plot viewer for comparative genomics
  ☆34Updated 2 years ago
• seryrzu / unialigner
  ☆66Updated last year
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆53Updated last year
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated 2 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆50Updated 5 years ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆34Updated 2 years ago