lh3 / longdustLinks
Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome
☆84Updated last month
Alternatives and similar repositories for longdust
Users that are interested in longdust are comparing it to the libraries listed below
Sorting:
- A local-haplotagging-based small and structural variant caller☆90Updated 2 weeks ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated last month
- Joint structural variant and copy number variant caller for HiFi sequencing data☆66Updated last month
- A battery of methylation tools for PacBio HiFi reads☆46Updated 3 weeks ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- ☆38Updated 5 months ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Simple pileup-based variant caller☆95Updated 8 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆38Updated 2 weeks ago
- Call select base modifications in PacBio HiFi reads☆15Updated last month
- ☆68Updated last week
- k-mer learning materials☆81Updated 10 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 9 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Updated 3 years ago
- Kmer Analysis of Pileups for Genotyping☆35Updated 3 weeks ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- Efficient low-divergence mapping of long reads in minimizer space☆70Updated 2 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆45Updated last year
- ☆78Updated 5 years ago
- A program for assessing the T2T genome continuity☆92Updated 2 weeks ago
- Show pangenome graphs in an easy way☆56Updated 4 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆52Updated 9 months ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆41Updated 3 weeks ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 8 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago