Full-length transcriptome splicing and mutation analysis
☆93Mar 23, 2026Updated 7 months ago
Alternatives and similar repositories for FLAMES
Users that are interested in FLAMES are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 3 years ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆43Jan 14, 2025Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆80Mar 21, 2023Updated 3 years ago
- A universal toolkit for upstream processing of long RNA reads☆245Oct 27, 2026Updated last week
- Single cell Nanopore sequencing data for Genotype and Phenotype☆60May 15, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- cDNA read preprocessing☆96Jul 25, 2024Updated 2 years ago
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆69Aug 13, 2026Updated 2 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆68Oct 11, 2024Updated 2 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆283Updated this week
- Full-Length Alternative Isoform analysis of RNA☆258Updated this week
- SingleCell Nanopore sequencing data analysis☆73May 30, 2025Updated last year
- End-to-end analysis of Oxford Nanopore single-cell sequencing, from barcode and UMI identification to gene and transcript expression☆121Jan 23, 2026Updated 9 months ago
- De novo construction of isoforms from long-read data☆48Sep 9, 2026Updated last month
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆282Sep 26, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆57Oct 26, 2026Updated last week
- ☆39Apr 25, 2023Updated 3 years ago
- ☆21May 31, 2024Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 9 months ago
- SUPPA: Fast quantification of splicing and differential splicing☆307Nov 6, 2025Updated 11 months ago
- Technology agnostic long read analysis pipeline for transcriptomes☆162Jan 25, 2024Updated 2 years ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Sep 21, 2021Updated 5 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆121Oct 21, 2026Updated last week
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 5 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 5 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆190Apr 12, 2023Updated 3 years ago
- Long-read Isoform Quantification and Analysis☆41Mar 25, 2025Updated last year
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- Visualizing transcript structure and annotation using ggplot2☆171Aug 24, 2024Updated 2 years ago
- De novo clustering of long transcript reads into genes☆83Oct 2, 2026Updated last month
- ☆24Jul 30, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆166Sep 14, 2026Updated last month
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Mar 3, 2026Updated 8 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆69Aug 19, 2026Updated 2 months ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆260Oct 2, 2026Updated last month
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆73Jan 31, 2024Updated 2 years ago
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆115Aug 18, 2026Updated 2 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆243Jun 24, 2026Updated 4 months ago