LuyiTian / FLAMESLinks
Full-length transcriptome splicing and mutation analysis
☆83Updated last year
Alternatives and similar repositories for FLAMES
Users that are interested in FLAMES are comparing it to the libraries listed below
Sorting:
- Single cell Nanopore sequencing data for Genotype and Phenotype☆54Updated last month
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆42Updated 6 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆66Updated 8 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 6 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- SNV calling from single cell sequencing☆100Updated 7 months ago
- ☆58Updated 3 years ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 5 months ago
- SingleCell Nanopore sequencing data analysis☆60Updated 3 weeks ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- ☆92Updated this week
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- HMMRATAC peak caller for ATAC-seq data☆100Updated 7 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 4 months ago
- Tutorial Website☆59Updated 4 years ago
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆76Updated 3 weeks ago
- Publication quality NGS track plotting☆113Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆39Updated last year
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆49Updated 2 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆73Updated 2 weeks ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆114Updated 4 months ago
- Software for Quantifying Interspersed Repeat Expression☆58Updated 3 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆69Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆66Updated 5 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆67Updated last week
- release version☆54Updated 2 years ago
- Battenberg R package for subclonal copynumber estimation☆88Updated 3 weeks ago