Alternatives and similar repositories for TRF-mod:

Users that are interested in TRF-mod are comparing it to the libraries listed below

• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆23Updated 4 months ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated 11 months ago
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated last year
• glogsdon1 / sunk-based_assembly
  ☆15Updated 3 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆23Updated 3 years ago
• at-cg / RAFT
  ☆22Updated 7 months ago
• T2T-apes / ape_pangenome
  pangenome analyses for complete genomes of great apes (and gibbon)
  ☆17Updated 5 months ago
• human-pangenomics / hprc-tutorials
  ☆16Updated 11 months ago
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆17Updated last week
• davidebolo1993 / cosigt
  ☆16Updated 3 weeks ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆24Updated last week
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆29Updated last year
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 9 months ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆12Updated 2 years ago
• ERGA-consortium / pipelines
  ☆16Updated 2 weeks ago
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆17Updated 6 years ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated 6 months ago
• gtrichard / mummer-ggplot
  Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.
  ☆11Updated 4 years ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆17Updated 4 months ago
• kammoji / gapFinisher
  A reliable gap filling pipeline for draft genomes
  ☆11Updated 5 years ago
• institut-de-genomique / HAPO-G
  Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.
  ☆25Updated last year
• WarrenLab / agptools
  Tools for working with agp files
  ☆13Updated last week
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆20Updated last month
• GTPB / CPANG22
  Computational Pangenomics
  ☆17Updated 2 years ago
• marbl / training
  Genome Assembly 102
  ☆14Updated 2 months ago
• lh3 / gffio
  ☆32Updated 2 years ago
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated last month
• isugifNF / polishCLR
  A nextflow pipeline for polishing CLR assemblies
  ☆17Updated 2 years ago