Tandem Repeats Finder: a program to analyze DNA sequences
☆24Jul 30, 2025Updated last year
Alternatives and similar repositories for TRF-mod
Users that are interested in TRF-mod are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- SRF: Satellite Repeat Finder☆107Jan 8, 2024Updated 2 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- ☆18Jan 29, 2025Updated last year
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 10 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆36Aug 18, 2025Updated 11 months ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 8 months ago
- Call select base modifications in PacBio HiFi reads☆19May 29, 2026Updated 2 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 5 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆114Jul 23, 2024Updated 2 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆25Jul 20, 2026Updated 3 weeks ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Mar 11, 2026Updated 5 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 3 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆40Oct 29, 2025Updated 9 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- use variant nesting information to flter overlapping sites from vg deconstruct output☆37Jun 12, 2025Updated last year
- ☆17Aug 6, 2025Updated last year
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- Dynamic Elongation of a Genome Assembly Path☆28Jul 27, 2026Updated 2 weeks ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆22Aug 5, 2026Updated last week
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- Show pangenome graphs in an easy way☆60Aug 7, 2025Updated last year
- Pangenome-based genome inference☆177Aug 6, 2026Updated last week
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 9 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tool for decomposition centromeric assemblies and long reads into monomers☆38Sep 17, 2022Updated 3 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 3 years ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- ☆10Jan 18, 2023Updated 3 years ago
- alignment to variation graph inducer☆163Jul 29, 2026Updated 2 weeks ago