lh3 / TRF-modLinks
Tandem Repeats Finder: a program to analyze DNA sequences
☆18Updated 4 months ago
Alternatives and similar repositories for TRF-mod
Users that are interested in TRF-mod are comparing it to the libraries listed below
Sorting:
- Consensus genome annotation using OMA☆31Updated 6 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Phasing reads with secondary alignments☆21Updated last year
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆24Updated 3 weeks ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- TD2☆29Updated 3 weeks ago
- COsine SImilarity-based Genotyper using pangenomes☆24Updated last week
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated 2 years ago
- ☆19Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- The MafFilter genome alignment processor☆19Updated last week
- ☆30Updated last year
- Simple tools for working with Hi-C data☆18Updated 7 years ago
- Convert HAL to VG☆23Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- A Hi-C scaffolding method☆22Updated 4 years ago
- Genome Assembly 102☆17Updated 8 months ago
- Infering ancestral synteny with hierarchical orthologous groups☆36Updated 2 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 8 months ago
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- Computational Pangenomics☆17Updated 3 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 6 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated 3 weeks ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆21Updated last month
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- ☆31Updated 6 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆29Updated last month