Alternatives and similar repositories for TRF-mod

Users that are interested in TRF-mod are comparing it to the libraries listed below

• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆24Updated last month
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 11 months ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆23Updated 3 years ago
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆18Updated 3 weeks ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated last year
• gtrichard / mummer-ggplot
  Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.
  ☆11Updated 4 years ago
• at-cg / RAFT
  ☆23Updated 9 months ago
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• human-pangenomics / hprc-tutorials
  ☆17Updated last year
• glogsdon1 / sunk-based_assembly
  ☆15Updated 4 years ago
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated last year
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆28Updated 8 months ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆13Updated 2 years ago
• Markusjsommer / TD2
  TD2
  ☆12Updated this week
• njdbickhart / GoatAssemblyScripts
  A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly
  ☆11Updated 8 years ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆29Updated last month
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆30Updated 2 years ago
• kammoji / gapFinisher
  A reliable gap filling pipeline for draft genomes
  ☆11Updated 5 years ago
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆20Updated 3 months ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆18Updated 6 months ago
• marbl / training
  Genome Assembly 102
  ☆13Updated last month
• T2T-apes / ape_pangenome
  pangenome analyses for complete genomes of great apes (and gibbon)
  ☆17Updated 7 months ago
• davidebolo1993 / cosigt
  ☆19Updated last week
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆18Updated 6 years ago
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆18Updated last week
• jnarayan81 / parallelLastz
  parallelLastz: Running Lastz in parallel
  ☆16Updated 8 months ago
• ERGA-consortium / pipelines
  ☆16Updated this week