lh3 / TRF-modLinks
Tandem Repeats Finder: a program to analyze DNA sequences
☆19Updated 6 months ago
Alternatives and similar repositories for TRF-mod
Users that are interested in TRF-mod are comparing it to the libraries listed below
Sorting:
- Consensus genome annotation using OMA☆31Updated 3 weeks ago
- COsine SImilarity-based Genotyper using pangenomes☆25Updated 2 weeks ago
- Simple tools for working with Hi-C data☆18Updated 7 years ago
- Genome Assembly 102☆17Updated 9 months ago
- ☆19Updated last year
- Improved long-read assembly by preserving contained reads☆30Updated last year
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A Hi-C scaffolding method☆22Updated 4 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆20Updated 2 weeks ago
- Improved Phased Assembler☆28Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 7 months ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated last year
- Phasing reads with secondary alignments☆21Updated last year
- SINE annotation tool for plant genomes☆18Updated 2 years ago
- TD2☆31Updated 3 weeks ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 11 months ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆24Updated last week
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Computational Pangenomics☆17Updated 3 years ago
- ☆16Updated 4 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- Centromere mapping and annotation pipeline☆22Updated this week
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Updated 4 years ago
- Better Alignments with Translated HMMER☆24Updated this week
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago