☆138Aug 26, 2026Updated this week
Alternatives and similar repositories for hpp_pangenome_resources
Users that are interested in hpp_pangenome_resources are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Assemblies from HPP Year 1 production☆82May 9, 2023Updated 3 years ago
- WDL’s and Dockerfiles for assembly QC process☆73Jun 12, 2026Updated 2 months ago
- ☆64Jun 14, 2021Updated 5 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated last week
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- GFA visualizer, GPU-accelerated using Vulkan☆80Aug 2, 2022Updated 4 years ago
- ☆102Apr 22, 2024Updated 2 years ago
- A complete diploid human genome☆158Aug 10, 2026Updated 2 weeks ago
- ☆51Jun 27, 2026Updated 2 months ago
- ☆290Dec 29, 2025Updated 8 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆46Oct 13, 2024Updated last year
- ☆22Apr 15, 2024Updated 2 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- General purpose utility related to GAF files☆37Aug 6, 2026Updated 3 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 4 months ago
- GRAph-based Finding of Individual Motif Occurrences☆33Aug 29, 2024Updated 2 years ago
- Pangenome-based genome inference☆179Aug 18, 2026Updated last week
- alignment to variation graph inducer☆165Jul 29, 2026Updated last month
- generating hardware accelerators for pangenomic graph queries☆45Jul 1, 2026Updated last month
- the pangenome graph builder☆513Jul 24, 2026Updated last month
- Identification of transposable element families from pangenome polymorphisms☆57Aug 11, 2026Updated 2 weeks ago
- linearize and simplify variation graphs using blocked partial order alignment☆64Aug 21, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- vcfdist: Accurately benchmarking phased variant calls☆89Updated this week
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆138Aug 12, 2026Updated 2 weeks ago
- Targeted genotyper for complex polymorphic genes☆45Updated this week
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 3 years ago
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 7 months ago
- GBWT-based handle graph☆35Aug 19, 2026Updated last week
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆250Aug 21, 2026Updated last week
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 10 months ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆24Dec 24, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆16Jan 10, 2022Updated 4 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- Official home of genome aligner based upon notion of Cactus graphs☆703Updated this week
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- ☆31Mar 27, 2024Updated 2 years ago
- Multiple sequence alignment of long tandem repeats☆31Jun 23, 2026Updated 2 months ago
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated 2 years ago