☆134Oct 18, 2023Updated 2 years ago
Alternatives and similar repositories for hpp_pangenome_resources
Users that are interested in hpp_pangenome_resources are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Assemblies from HPP Year 1 production☆82May 9, 2023Updated 3 years ago
- WDL’s and Dockerfiles for assembly QC process☆73Jun 12, 2026Updated last month
- ☆64Jun 14, 2021Updated 5 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40May 4, 2026Updated 2 months ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GFA visualizer, GPU-accelerated using Vulkan☆78Aug 2, 2022Updated 3 years ago
- ☆102Apr 22, 2024Updated 2 years ago
- A complete diploid human genome☆153Jun 23, 2026Updated 3 weeks ago
- ☆49Jun 27, 2026Updated 3 weeks ago
- ☆289Dec 29, 2025Updated 6 months ago
- ☆21Apr 15, 2024Updated 2 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆46Oct 13, 2024Updated last year
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- General purpose utility related to GAF files☆31May 20, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 2 months ago
- GRAph-based Finding of Individual Motif Occurrences☆31Aug 29, 2024Updated last year
- Pangenome-based genome inference☆175Jun 15, 2026Updated last month
- alignment to variation graph inducer☆163Jun 17, 2026Updated last month
- generating hardware accelerators for pangenomic graph queries☆45Jul 1, 2026Updated 2 weeks ago
- the pangenome graph builder☆507Mar 31, 2026Updated 3 months ago
- Identification of transposable element families from pangenome polymorphisms☆57Jun 8, 2026Updated last month
- linearize and simplify variation graphs using blocked partial order alignment☆63Mar 31, 2026Updated 3 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- vcfdist: Accurately benchmarking phased variant calls☆87Updated this week
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆136Updated this week
- Targeted genotyper for complex polymorphic genes☆43Jul 7, 2026Updated 2 weeks ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 3 years ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 6 months ago
- GBWT-based handle graph☆35Jun 17, 2026Updated last month
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆246Jul 14, 2026Updated last week
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 8 months ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Dec 24, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- ☆16Jan 10, 2022Updated 4 years ago
- Official home of genome aligner based upon notion of Cactus graphs☆696Updated this week
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- ☆31Mar 27, 2024Updated 2 years ago
- Multiple sequence alignment of long tandem repeats☆30Jun 23, 2026Updated 3 weeks ago
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated 2 years ago